福井　学の低温研便り

北海道大学　低温科学研究所　微生物生態学分野
大学院：環境科学院　生物圏科学専攻　分子生物学コース

観察眼

2019-10-30 17:32:00 | 日記
どうして君は他人の報告を信じるばかりで自分の眼で観察したりしなかったのですか。

　　　　ガリレオ・ガリレイ『天文対話』より（1632）






＜イメージ写真（写真の人物とは全く関係ありません）＞

研究論文update191030

2019-10-30 16:37:53 | これまでの学位論文
【2019年以降】

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfofundulus. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfarcimen. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfarcimenaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfofalx gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfovectis. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulforadius. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfohalotomaculum. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Genus Desulforamulus gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfotomaculum. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfocanica gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfomaculaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfurisporaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfallaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfoscipio gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfallas. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfobara. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfovirgula. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfonema. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Labilibaculum antarcticum sp. nov., a novel facultative anaerobic, psychrotorelant bacterium isolated from marine sediment of Antarctica. Antonie van Leeuwenhoek, in press.

*.Miho Watanabe, Manabu Fukui, Alexander Galushko and Jan Kuever. Genus Desulfosarcina. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment : in press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfatitalea. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfocucumis. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfocucuminaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfoplanes. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Melody Christine Cabrera-Ospino, Hisaya Kojima and Manabu Fukui. Arsenite oxidation by a newly isolated betaproteobacterium possessing arx genes and diversity of the arx gene cluster in bacterial genomes. Frontiers in Microbiology. In press

*. Tomohiro Watanabe, Hisaya Kojima, Kazuhiro Umezawa, Chiaki Hori, Taichi E. Takasuka, Tukako Kato and Manabu Fukui. Genomes of neutrophilic sulfur-oxidizing chemolithoautotrophs representing 9 proteobacterial species from 8 genera. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00316

*. Miho Watanabe, Hisaya Kojima, Kazuhiro Umezawa, and Manabu Fukui. Genomic characteristics of Desulfonema ishimotonii Tokyo 01T implying horizontal gene transfer among phylogenetically dispersed filamentous gliding bacteria. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00227

*. Mia Terashima, Keisuke Ohashi, Taichi E. Takasuka, Hisaya Kojima and Manabu Fukui. Antarctic heterotrophic bacterium Hymenobacter nivis P3T diplays light-enhanced growth and expresses putative proteins. Environmental Microbiology Reports 11:227-235. 2019. DOI:　10.1111/1758-2229.12702


【2018年】

*. Tatsunori Nakagawa, Yuki Tsuchiya, Shingo Ueda, Manabu Fukui and Reiji Takahashi. Eelgrass Sediment Microbiome as a Nitrous Oxide Sink in Brackish Lake Akkeshi, Japan. Microbes and Environments : in press. https://doi.org/10.1264/jsme2.ME18103

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov., and Desulfohalotomaculum gen. nov. International Journal of Systematic and Evolutionary Microbiology68(9):2891-2899.2018. doi: 10.1099/ijsem.0.002915.

*. Melody Cabrera Ospino, Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Diversity of anaerobic arsenite-oxidizing bacteria in low-salt environments analyzed with a newly develoed PCR-based method. Limnology 19: 177-183. 2018.　

*. Junji Matsuo, Shinji Nakamura, Torahiko Okubo, Manabu Fukui and Hiroyuki Yamaguchi. Long-term survival Naegleria polaris from Antarctica after 10 years storage at 4℃. Parasitology Research 117: 937-941. 2018.

*. Miho Watanabe , Hisaya Kojima and Manabu Fukui. Complete genome sequence of Marinifilaceae bacterium strain SPP2, isolated from Antarctic marine sediment. Marine Genomics 39: 1-2. 2018.


【2017年】

*. Miho Watanabe, Riho Tokizawa, Hisaya Kojima and Manabu Fukui. High-quality draft genome sequence of Effusibacillus lacus skLN, facultative anaerobic spore-former isolated from freshwater lake sediment. Standards in Genomic Science 17:64. 2017. DOI 10.1186/s4079-017-302-y.

*Rei Okamoto, Hisaya Kojima and Manabu Fukui. Acidocella aquatica sp. nov., a novel acidophilic heterotrophic bacterium isolated from a freshwater lake. International Journal of Systematics and Evolutionary Microbiology 67: 4773-4776. 2017. DOI 10.1099/ijsem.0.002376.

* Masayuki Itoh, Hisaya Kojima, Pei-Chi Ho, Chun-Wei Chang, Tzong-Yueh Chen, Silver Sung-Yun Hsiao, Yuki Kobayashi, Megumi Fujibayashi, Shuh-Ji Kao, Chih-hao Hsieh, Manabu Fukui, Noboru Okuda, Takeshi Miki and Fuh-Kwo Shiah. Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan. Ecological Research 32: 861-871. 2017. DOI 10.1007/s11284-017-1502-z.

*. Mia Terashima, Kazuhiro Umezawa, Shoichi Mori, Hisaya Kojima and Manabu Fukui. Microbial community structure analysis of colored snow from alpine snowfield in northern Japan reveals the prevalence of Betaproteobacteria with snow algae. Frontiers in Microbiology 8: 1481. doi:10.3389/fmicb.2017.01481

*. Hisaya Kojima, Miho Watanabe and Manabu Fukui. Sulfurivermis fontis gen. nov., sp. nov., a novel sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov. International Journal of Systematic and Evolutionary Microbiology 67: 3458-3461. 2017.

*. Tomohiro Watanabe, Aya Miura, Tomoya Iwata, Hisaya Kojima and Manabu Fukui. Dominance of Sulfuritalea species in nitrate-depleted water of a stratified freshwater lake and arsenate respiration ability within the genus. Environmental Microbiology Reports 9: 522-527. 2017.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Desulfoplanes formicivorans Pf12BT, a sulfate-reducing bacterium of the family Desulfomicrobiaceae. Standards in Genomic Sciences 2: 34. 2017.DOI:

*. Miho Watanabe, Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Desulfosarcina widdelii sp. nov. and Desulfosarcina alkanivorans sp. nov., hydrocarbon-degrading sulfate-reducing bacteria isolated from marine sediment and emended description of the genus Desulfosarcina. International Journal of Systematic and Evolutionary Microbiology 67: 2994-2997. 2017.DOI:

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfocucumis palustris gen. nov., sp. nov., a mesophilic sulfate reducer belonging to the Desulfotomaculum subcluster Ig. International Journal of Systematic and Evolutionary Microbiology 67: 2679-2682. 2017. DOI:

*. Hisaya Kojima, Miho Watanabe, and Manabu Fukui. Sulfuritortus calidifontis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a hot spring microbial mat. International Journal of Systematic and Evolutionary Microbiology 67:1355-1358. 2017. DOI: 10.1099/ijsem.0.001813


【2016年】

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui.Identity of major sulfur cycle prokaryotes in freshwater lake ecosystems revealed by a comprenensive phylogenetic study of the dissimilatory adenylylsulfate reductase. Scientific Reports 6: 36262. 2016.

*. Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima and Manabu Fukui. The complete genome sequences of sulfur-oxidizing gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T. Standards in Genomic Sciences 11: 71. 2016.

*. Hisaya Kojima, Miho Watanabe, Riho Tokizawa, Arisa Shinohara and Manabu Fukui. Hymenobacter nivis sp. nov., isolated from red snow in Antarctica. International Journal of Systematic and Evolutionary Microbiology 66: 4821-4825. 2016. DOI: 10.1099/ijsem.0.001435

*. Yuki Kobayashi, Hisaya Kojima, Masayuki Itoh, Noboru Okuda, Manabu Fukui and Fuh-Kwo Shiah. Abundance of planktonic methane-oxidizing bacteria in a subtropical reservoir. Plankton and Benthos Research 11: 144-146.2016. DOI: 10.3800/pbr.11.144

*. Hisaya Kojima and Manabu Fukui. Sulfuriflexus mobilis gen. nov., sp. nov., a sulfur-oxidizing bacterium isolated from a brackish lake sediment. International Journal of Systematic and Evolutionary Microbiology 66: 3515-3518.2016. doi: 10.1099/ijsem.0.001227

*. Rachel Rudd, Jonathan Tyler, John Tibby, Yusuke Yokoyama, Ines Tavernier, Elie Verleyen, Manabu Fukui and Yoshinori Takano. A diatom inferred of lake hydrological variability during the last 900 years in Luetzow-Holm Bay, East Antarctica. Journal of Quaternary Science 31: 114-125. 2016. DOI: 10.1002/jqs.2845


*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula thiophila sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium, and correction of the name Sulfuriferula plumbophilus Watanabe, Kojima and Fukui 2015 to Sulfuriferula plumbophila corrig.　International Journal of Systematic and Evolutionary Microbiology 66: 2041-2045.2016. Doi: 10.1099/ijsem.0.000988.

*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Planktonic bacterial communities in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 145-169.Springer. 2016.

*. Tomoya Iwata, Naoki Mochizuki, Takao Suzuki, Ayato Kohzu, Hisaya Kojima, Manabu Fukui and Jotaro Urabe. Roles of terrestrial carbon subsidies to aquatic community metabolism in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 115-144. Springer. 2016.

*. Tomohiro Watanabe, Aya Miura, Arisa Shinohara, Hisaya Kojima and Manabu Fukui. Thermithiobacillus plumbiphilus sp. nov., a sulfur-oxidizing bacterium isolated from lead sulfide.　International Journal of Sysytematic and Evolutionary Microbiology 66: 1986-1989.2016. Doi: 10.1099/ijsem.0.000972.

*. Hisaya Kojima, Kazuhiro Umezawa and Manabu Fukui. Caldimicrobium thiodismutans sp. nov., a sulfur-disproportionating bacterium isolated from a hot spring, and emended description of the genus Caldimicrobium. International Journal of Systematics and Evolutionary Microbiology 66: 1828-1831.2016. Doi: 10.1099/ijsem.0.000947.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Complete genome sequence and cell structure of Limnochorda pilosa, a Gram negative spore former whithin the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 66: 1330-1339. 2016. Doi:10.1099/ijsem.0.000881.

*. Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Sulfuricaulis limicola gen. nov., sp. nov., a novel sulfur oxidizer from a lake. International Journal of Systematic and Evolutionary Microbiology 66: 266-270. 2016. Doi: 10.1099/ijsem.0.000709.

*. Tomohiro Watanabe, Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurirhabdus autotrophica gen. nov., sp. nov., isolated from a freshwater lake.　International Journal of Systematic and Evolutionary Microbiology 66: 113-117.2016. Doi: 10.1099/ijsem.0.000679.


【2015年】

*. Yuriko Higashioka, Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Draft genome sequence of Desulfatitalea tepidiphila S28bFT. Genome Announcements 3: e01326-15. 2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Mizugakiibacter sediminis skMP5T. Genome Announcements 3: e01185-15. 2015.

*. Ikumi Oyabu, Yoshinori Iizuka, Hubertus Fischer, Simon Schüpbach, Gideon Gfeller, Anders Svensson, Manabu Fukui, Jørgen Peder Steffensen, and Margareta Hansson. Chemical compositions of solid particles present in the Greenland NEEM ice core over the last 110,000 years. Journal of Geophysical Research-Atmospheres 120: 9789-9813.2015. DOI: 10.1002/2015JD023290

*. Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurifustis variabilis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a lake, and proposal of Acidiferrobacteraceae fam. nov. and Acidiferrobacterales ord. nov. International Journal of Systematic and Evolutionary Microbiology 65: 3709-3713.2015. Doi:10.1099/ijsem.0.000479

*. Masayuki Itoh, Yuki Kobayashi, Tzong-Yueh Chen, Takeshi Tokida, Manabu Fukui, Hisaya Kojima, Takeshi Miki, Ichiro Tayasu, Fuh-Kwo Shiah and Noboru Okuda. Effect of inter-annual variation in winter vertical mixing on CH4 dynamics in a subtropical reservoir. Journal of Geophysics Research-Biogeoscience 120: 1246-1261. 2015.

*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Inter-taxonomic differences in bacterioplankton community assembly in oligotrophic mountain lakes of east Japan. Aquatic Microbial Ecology 75: 251-257. 2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of a sulfur-oxidizing autotroph, Sulfuricella sp. strain T08, isolated from a freshwater lake. Genome Announcements 3: e00498-15. 2015.

*. Miho Watanabe, Hisaya Kojima, Manabu Fukui. Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultative anaerobic pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 65: 2378-2394.2015. Doi:10.1099/ijs.0.000270

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfoplanes formicivorans gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a brackish meromictic lake, and emended description of the family Desulfomicrobiaceae. International Journal of Systematic and Evolutionary Microbiology 65: 1902-1907.2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov.　International Journal of Systematic and Evolutionary Microbiology 65: 1504-1508.2015.

*. Yoshinori Takano, Hisaya Kojima, Eriko Takeda, Yusuke Yokoyama and Manabu Fukui. Biogeochemistry and limnology in Antarctic subglacial weathering: molecular evidence of the linkage between subglacial silica input and primary producers in a perennially ice-covered lake. Progress in Earth and Planetary Science 2: 8 (pp15). 2015.

*. Hisaya Kojima, Yoshitoshi Ogura, Nozomi Yamamoto, Tomoaki Togashi, Hiroshi Mori, Tomohiro Watanabe, Fumiko Nemoto, Ken Kurokawa, Tetsuya Hayashi and Manabu Fukui. Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence. The ISME Journal 9: 1166-1176.2015.

【2014年】
*. Hisaya Kojima, Riho Tokizawa and Manabu Fukui. Mizugakiibacter sediminis gen. nov., sp. nov., isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 3983-3987. 2014.

*. Hisaya Kojima, Riho Tokizawa, Kouhei Kogure, Yuki Kobayashi, Masayuki Itoh, Fuh-Kuw Shiah, Noboru Okuda and Manabu Fukui. Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer. Scientific Reports 4: 5728. DOI: 10.1038/srep05728.

*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria. Systematic and Applied Microbiology 37: 387-395.2014.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Proposal of Effusibacillus lacus gen. nov., sp. nov. and reclassification of Alicyclobacillus pohliae as Effusibacillus pohliae comb. nov. and Alicyclobacillus consociatus as Effusibacillus consociatus comb. nov.. International Journal of Systematic and Evolutionary Microbiology 64: 2770-2774.2014.

*. Kyoko Kubo, Hisaya Kojima, and Manabu Fukui. Vertical distribution of major sulfate-reducing bacteria in a eutrophic shallow meromictic lake. Systematic and Applied Microbiology 37: 510-519. 2014.

*. Hisaya Kojima, Johanna Moll, Joerg Kahnt, Manabu Fukui and Seigo Shima. A reversed genetic approach reveals the coenzyme specificity and the catalytic properties of three enzymes putatively involved in anaerobic oxidation of methane with sulfate. Environmental Microbiology 16: 3431-3442. 2014.

*. Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Identification of major planktonic sulfur oxidizers in stratified freshwater lake. PLoS ONE : e93877. 2014.

*. Hisaya Kojima and Manabu Fukui. Sulfurisoma sediminicola gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 1587-1592. 2014.

【2013年】

*. Tomohiro Watanabe, Hisaya Kojima, Yoshinori Takano and Manabu Fukui. Diversity of sulfur-cycle prokaryotes in freshwater lake sediments investigated using aprA as functional marker gene. Systematic and Applied Microbiology 36: 436-443.2013.

*. Yoshinori Iizuka, Barbara Delmonte, Ikumi Oyabu, Torbjoern Karlin, Valter Maggi, Amuel Albani, Manabu Fukui, Takeo Hondoh and Margareta Hansson. Sulphate and chloride aerosols during Holocene and last glacial periods preserved in the Talos Dome Ice Core, a peripheral region of Antarctica. Tellus B 65: 20197.2013.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfotomaculum intricatum sp. nov., a sulfate-reducer isolated from freshwater lake sediment. International Journal of Systematic and Evolutionary Microbiology 63: 3574-3578. 2013.

*.Takato Matsui, Hisaya Kojima, and Manabu Fukui. Effects of temperature on successive anaerobic decomposition of high-molecular organic matter under sulfate-reducing conditions. Estuarine, Coastal and Shelf Science 119: 139-144. 2013.

*. Akiko Kamono, Marianne Meyer, Thomas Cavalier-Smith,　Manabu Fukui and Anne Maria Fiore-Donno. Exploring slime mould diversity in high altitude forests and grasslands by environmental RNA analysis. FEMS Microbiology Ecology 84: 98-108. 2013.

*. Yuriko Higashioka, Hisaya Kojima, Miho Watanabe and Manabu Fukui. Desulfatitalea tepidiphila gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from tidal flat sediment. International Journal of Systematic and Evolutionary Microbiology 63: 761-765. 2013.

【2012年】

*. Yoshinori Takano, Jonathan James Tyler, Hisaya Kojima, Yusuke Yokoyama, Yukiko Tanabe, Takaharu Sato, Nanako O. Ogawa, Naohiko Ohkouchi, and Manabu Fukui. Holocene lake developments and glacial-isostatic uplift at Lake Skallen and Lake Oyako, Luetzow-Holm Bay, east Antarctica: based on biogeochemical facies and molecular signatures. Applied Geochemistry 27: 2546-2559. 2012.

*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Draft genome sequence of a psychrotolerant sulfur-oxidizing bacterium Sulfuricella denitrificans skB26 and proteomic insights into cold adaptation. Applied and Environmental Microbiology 78: 6545-6549. 2012.

*. Fumiko Nemoto, Hisaya Kojima, Akifumi Ohtaka and Manabu Fukui. Filamentous sulfur-oxidizing bacteria of the genus Thioploca from Lake Tonle Sap in Cambodia. Aquatic Microbial Ecology 66: 295-300. 2012.

*. Anne Maria Fiore-Donno, Akiko Kamono, Marianne Meyer, Martin Schnittler, Manabu Fukui and Thomas Cavalier-Smith. 18S rDNA phylogeny of Lanmproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa). PLoS ONE 7: e35359. 2012.

*. Hisaya Kojima, Masazumi Tsutsumi, Kanako Ishikawa, Tomoya Iwata, Marc Mussmann and Manabu Fukui. Distribution of putative denitrifying methane oxidizing bacteria of a freshwater lake. Systematic and Applied Microbiology 35: 233-238. 2012.

*. Yuriko Higashioka, Hisaya Kojima, and Manabu Fukui. Isolation and characterization of novel sulfate-reducing bacterium capable anaerobic degradation of p-xylene. Microbes and Environments 27: 273-277. 2012.

*. Masanaori Fujii, Hisaya Kojima, Tomoya Iwata, Jotaro Urabe and Manabu Fukui. Dissolved organic carbon as major environmental factor affecting bacterioplankton communities in mountain lakes of eastern Japan. Microbial Ecology 63: 496-508. 2012.

*. Masazumi Tsutsumi, Hisaya Kojima, and Manabu Fukui. Vertical profiles of abundance and potential activity of methane-oxidizing bacteria in sediment of Lake Biwa, Japan. Microbes and Environments 27: 67-71. 2012.

【2011年】

*. Fumiko Nemoto, Hisaya Kojima, and Manabu Fukui. Diversity of freshwater Thioploca species and their specific association with filamentous bacteria of the phylum Chloroflexi. Microbial Ecology 62：753-764.2011.

*. Hisaya Kojima, and Manabu Fukui. Sulfuritalea hydrogenivorans gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 61: 1651-1655. 2011.

*. Masazumi Tsutsumi, Tomoya Iwata, Hisaya Kojima, and Manabu Fukui. Spatiotemporal variations in an assemblage of closely related planktonic aerobic methanotrophs. Freshwater Biology 56: 342-351. 2011.

*. Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Temperature-dependent differences in community structure of bacteria involved in degradation of petroleum hydrocarbons under sulfate-reducing conditions. Journal of Applied and Microbiology　110: 314-322. 2011.

*. Kyoko Kubo, Katrin Knittel, Rudolf Amann, Manabu Fukui and Katsumi Matsuura. Sulfur-metabolizing bacteria populations in microbial mats of the Nakabusa hot spring, Japan. Systematic and Applied Microbiology 34: 293-302, 2011.

【2010年】

*. Hisaya Kojima, and Manabu Fukui. Sulfuricella denitrificans gen. nov., sp. nov., a novel sulfur-oxidizing autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60:2862-2866. 2010.

*. Keiichi Tabuchi, Hisaya Kojima, and Manabu Fukui. Seasonal changes in organic matter mineralization in a sublittoral sediment and temperature-driven decoupling of key processes. Microbial Ecology 60: 551-560. 2010.

*. Masanaori Fujii, Yoshinori Takano, Hisaya Kojima, Tamotsu Hoshino, Ryoichi Tanaka and Manabu Fukui. Microbial community structure, pigment composition, and nitrogen source of red snow in Antarctica. Microbial Ecology 59: 466-4775.2010.

*. Anne Fiore-Donno, Akiko Kamono, Ema Chao, Manabu Fukui and Thomas Cavalier-Smith. Invalidation of hyperamoeba by transferring its species to other genera of Myxogastria. Journal of Eukaryotic Biology 52: 189-196. 2010.

【2009年】

*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment : in press.

*. Akiko Kamono, Hisaya Kojima, Jun Matsumoto, Kimitaka Kawamura and Manabu Fukui. Airborne Myxomycete spore: Detection using molecular techniques. Naturwissenschaften　96: 147-151.2009.

*. Masazumi Tsutsumi, Hisaya Kojima, Shigeru Uemura, Kiyomi Ono, Akihiro Sumida, Toshihiko Hara and Manabu Fukui. Structure and activity of soil-inhabiting methanotrophic communities in northern forest of Japan. Soil Biology and Biochemistry　 41: 403-408.2009.

*. Yuriko Higashioka, Hisaya Kojima, Tatsunori Nakagawa, Shinya Sato and Manabu Fukui. A novel n-alkane-degrading bacterium as a minor member of p-xylene-degrading sulfate-reducing consortium. Biodegradation　20: 383-390.2009.　

*. Yuriko Higashioka, Hisaya Kojima, Shinya Sato, Manabu Fukui. Microbial community analysis at crude oil-contaminated soils targeting the 16S ribosomal RNA, xylM, C23O, and bcr genes. Journal of Applied Microbiology　107: 126-135. 2009.

*. Hisaya Kojima, Tomoya Iwata, and Manabu Fukui. DNA-based analysis of planktonic methanotrophs in a stratified lake. Freshwater Biology　54: 1501-1509.2009.

*. Akiko Kamono, Jun Matsumoto, Hisaya Kojima, and Manabu Fukui. Characterization of myxomycete communities in soil by reverse transcription polymerase chain reaction (RT-PCR)-based method. Soil Biology and Biochemistry 41: 1324-1330. 2009.

*. Hisaya Kojima, Haruo Fukuhara and Manabu Fukui. Community structure of microorganisms asssociated with reddish-brown iron-rich snow. Systematic and Applied Microbiology 32: 429-437. 2009.



データ

2019-10-29 14:22:26 | 日記
手に入ったデータを全部使わないで、その一部分だけに基づいて判断をくだす裁判官があるとしたら、われわれはどんな評価をくだすだろうか。

　　　　アルフレッド・ウェゲナー『大陸と海洋の起源』（1915年）より







【ウェルカムホテルロビーにて（ドイツ・マールブルグ）】




【アルフレッド・ウェゲナー極地海洋研究所にて（ドイツ・ブレーマーハーフェン）】




研究論文upadate191023

2019-10-23 17:13:19 | ちかごろの研究論文
【2019年以降】

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfotomaculum. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfocanica gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfomaculaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfurisporaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfallaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfoscipio gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfallas. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfobara. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfovirgula. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfonema. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Labilibaculum antarcticum sp. nov., a novel facultative anaerobic, psychrotorelant bacterium isolated from marine sediment of Antarctica. Antonie van Leeuwenhoek, in press.

*.Miho Watanabe, Manabu Fukui, Alexander Galushko and Jan Kuever. Genus Desulfosarcina. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment : in press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfatitalea. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfocucumis. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfocucuminaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfoplanes. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Melody Christine Cabrera-Ospino, Hisaya Kojima and Manabu Fukui. Arsenite oxidation by a newly isolated betaproteobacterium possessing arx genes and diversity of the arx gene cluster in bacterial genomes. Frontiers in Microbiology. In press

*. Tomohiro Watanabe, Hisaya Kojima, Kazuhiro Umezawa, Chiaki Hori, Taichi E. Takasuka, Tukako Kato and Manabu Fukui. Genomes of neutrophilic sulfur-oxidizing chemolithoautotrophs representing 9 proteobacterial species from 8 genera. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00316

*. Miho Watanabe, Hisaya Kojima, Kazuhiro Umezawa, and Manabu Fukui. Genomic characteristics of Desulfonema ishimotonii Tokyo 01T implying horizontal gene transfer among phylogenetically dispersed filamentous gliding bacteria. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00227

*. Mia Terashima, Keisuke Ohashi, Taichi E. Takasuka, Hisaya Kojima and Manabu Fukui. Antarctic heterotrophic bacterium Hymenobacter nivis P3T diplays light-enhanced growth and expresses putative proteins. Environmental Microbiology Reports 11:227-235. 2019. DOI:　10.1111/1758-2229.12702


【2018年】

*. Tatsunori Nakagawa, Yuki Tsuchiya, Shingo Ueda, Manabu Fukui and Reiji Takahashi. Eelgrass Sediment Microbiome as a Nitrous Oxide Sink in Brackish Lake Akkeshi, Japan. Microbes and Environments : in press. https://doi.org/10.1264/jsme2.ME18103

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov., and Desulfohalotomaculum gen. nov. International Journal of Systematic and Evolutionary Microbiology68(9):2891-2899.2018. doi: 10.1099/ijsem.0.002915.

*. Melody Cabrera Ospino, Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Diversity of anaerobic arsenite-oxidizing bacteria in low-salt environments analyzed with a newly develoed PCR-based method. Limnology 19: 177-183. 2018.　

*. Junji Matsuo, Shinji Nakamura, Torahiko Okubo, Manabu Fukui and Hiroyuki Yamaguchi. Long-term survival Naegleria polaris from Antarctica after 10 years storage at 4℃. Parasitology Research 117: 937-941. 2018.

*. Miho Watanabe , Hisaya Kojima and Manabu Fukui. Complete genome sequence of Marinifilaceae bacterium strain SPP2, isolated from Antarctic marine sediment. Marine Genomics 39: 1-2. 2018.


【2017年】

*. Miho Watanabe, Riho Tokizawa, Hisaya Kojima and Manabu Fukui. High-quality draft genome sequence of Effusibacillus lacus skLN, facultative anaerobic spore-former isolated from freshwater lake sediment. Standards in Genomic Science 17:64. 2017. DOI 10.1186/s4079-017-302-y.

*Rei Okamoto, Hisaya Kojima and Manabu Fukui. Acidocella aquatica sp. nov., a novel acidophilic heterotrophic bacterium isolated from a freshwater lake. International Journal of Systematics and Evolutionary Microbiology 67: 4773-4776. 2017. DOI 10.1099/ijsem.0.002376.

* Masayuki Itoh, Hisaya Kojima, Pei-Chi Ho, Chun-Wei Chang, Tzong-Yueh Chen, Silver Sung-Yun Hsiao, Yuki Kobayashi, Megumi Fujibayashi, Shuh-Ji Kao, Chih-hao Hsieh, Manabu Fukui, Noboru Okuda, Takeshi Miki and Fuh-Kwo Shiah. Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan. Ecological Research 32: 861-871. 2017. DOI 10.1007/s11284-017-1502-z.

*. Mia Terashima, Kazuhiro Umezawa, Shoichi Mori, Hisaya Kojima and Manabu Fukui. Microbial community structure analysis of colored snow from alpine snowfield in northern Japan reveals the prevalence of Betaproteobacteria with snow algae. Frontiers in Microbiology 8: 1481. doi:10.3389/fmicb.2017.01481

*. Hisaya Kojima, Miho Watanabe and Manabu Fukui. Sulfurivermis fontis gen. nov., sp. nov., a novel sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov. International Journal of Systematic and Evolutionary Microbiology 67: 3458-3461. 2017.

*. Tomohiro Watanabe, Aya Miura, Tomoya Iwata, Hisaya Kojima and Manabu Fukui. Dominance of Sulfuritalea species in nitrate-depleted water of a stratified freshwater lake and arsenate respiration ability within the genus. Environmental Microbiology Reports 9: 522-527. 2017.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Desulfoplanes formicivorans Pf12BT, a sulfate-reducing bacterium of the family Desulfomicrobiaceae. Standards in Genomic Sciences 2: 34. 2017.DOI:

*. Miho Watanabe, Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Desulfosarcina widdelii sp. nov. and Desulfosarcina alkanivorans sp. nov., hydrocarbon-degrading sulfate-reducing bacteria isolated from marine sediment and emended description of the genus Desulfosarcina. International Journal of Systematic and Evolutionary Microbiology 67: 2994-2997. 2017.DOI:

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfocucumis palustris gen. nov., sp. nov., a mesophilic sulfate reducer belonging to the Desulfotomaculum subcluster Ig. International Journal of Systematic and Evolutionary Microbiology 67: 2679-2682. 2017. DOI:

*. Hisaya Kojima, Miho Watanabe, and Manabu Fukui. Sulfuritortus calidifontis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a hot spring microbial mat. International Journal of Systematic and Evolutionary Microbiology 67:1355-1358. 2017. DOI: 10.1099/ijsem.0.001813


【2016年】

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui.Identity of major sulfur cycle prokaryotes in freshwater lake ecosystems revealed by a comprenensive phylogenetic study of the dissimilatory adenylylsulfate reductase. Scientific Reports 6: 36262. 2016.

*. Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima and Manabu Fukui. The complete genome sequences of sulfur-oxidizing gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T. Standards in Genomic Sciences 11: 71. 2016.

*. Hisaya Kojima, Miho Watanabe, Riho Tokizawa, Arisa Shinohara and Manabu Fukui. Hymenobacter nivis sp. nov., isolated from red snow in Antarctica. International Journal of Systematic and Evolutionary Microbiology 66: 4821-4825. 2016. DOI: 10.1099/ijsem.0.001435

*. Yuki Kobayashi, Hisaya Kojima, Masayuki Itoh, Noboru Okuda, Manabu Fukui and Fuh-Kwo Shiah. Abundance of planktonic methane-oxidizing bacteria in a subtropical reservoir. Plankton and Benthos Research 11: 144-146.2016. DOI: 10.3800/pbr.11.144

*. Hisaya Kojima and Manabu Fukui. Sulfuriflexus mobilis gen. nov., sp. nov., a sulfur-oxidizing bacterium isolated from a brackish lake sediment. International Journal of Systematic and Evolutionary Microbiology 66: 3515-3518.2016. doi: 10.1099/ijsem.0.001227

*. Rachel Rudd, Jonathan Tyler, John Tibby, Yusuke Yokoyama, Ines Tavernier, Elie Verleyen, Manabu Fukui and Yoshinori Takano. A diatom inferred of lake hydrological variability during the last 900 years in Luetzow-Holm Bay, East Antarctica. Journal of Quaternary Science 31: 114-125. 2016. DOI: 10.1002/jqs.2845


*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula thiophila sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium, and correction of the name Sulfuriferula plumbophilus Watanabe, Kojima and Fukui 2015 to Sulfuriferula plumbophila corrig.　International Journal of Systematic and Evolutionary Microbiology 66: 2041-2045.2016. Doi: 10.1099/ijsem.0.000988.

*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Planktonic bacterial communities in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 145-169.Springer. 2016.

*. Tomoya Iwata, Naoki Mochizuki, Takao Suzuki, Ayato Kohzu, Hisaya Kojima, Manabu Fukui and Jotaro Urabe. Roles of terrestrial carbon subsidies to aquatic community metabolism in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 115-144. Springer. 2016.

*. Tomohiro Watanabe, Aya Miura, Arisa Shinohara, Hisaya Kojima and Manabu Fukui. Thermithiobacillus plumbiphilus sp. nov., a sulfur-oxidizing bacterium isolated from lead sulfide.　International Journal of Sysytematic and Evolutionary Microbiology 66: 1986-1989.2016. Doi: 10.1099/ijsem.0.000972.

*. Hisaya Kojima, Kazuhiro Umezawa and Manabu Fukui. Caldimicrobium thiodismutans sp. nov., a sulfur-disproportionating bacterium isolated from a hot spring, and emended description of the genus Caldimicrobium. International Journal of Systematics and Evolutionary Microbiology 66: 1828-1831.2016. Doi: 10.1099/ijsem.0.000947.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Complete genome sequence and cell structure of Limnochorda pilosa, a Gram negative spore former whithin the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 66: 1330-1339. 2016. Doi:10.1099/ijsem.0.000881.

*. Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Sulfuricaulis limicola gen. nov., sp. nov., a novel sulfur oxidizer from a lake. International Journal of Systematic and Evolutionary Microbiology 66: 266-270. 2016. Doi: 10.1099/ijsem.0.000709.

*. Tomohiro Watanabe, Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurirhabdus autotrophica gen. nov., sp. nov., isolated from a freshwater lake.　International Journal of Systematic and Evolutionary Microbiology 66: 113-117.2016. Doi: 10.1099/ijsem.0.000679.


【2015年】

*. Yuriko Higashioka, Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Draft genome sequence of Desulfatitalea tepidiphila S28bFT. Genome Announcements 3: e01326-15. 2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Mizugakiibacter sediminis skMP5T. Genome Announcements 3: e01185-15. 2015.

*. Ikumi Oyabu, Yoshinori Iizuka, Hubertus Fischer, Simon Schüpbach, Gideon Gfeller, Anders Svensson, Manabu Fukui, Jørgen Peder Steffensen, and Margareta Hansson. Chemical compositions of solid particles present in the Greenland NEEM ice core over the last 110,000 years. Journal of Geophysical Research-Atmospheres 120: 9789-9813.2015. DOI: 10.1002/2015JD023290

*. Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurifustis variabilis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a lake, and proposal of Acidiferrobacteraceae fam. nov. and Acidiferrobacterales ord. nov. International Journal of Systematic and Evolutionary Microbiology 65: 3709-3713.2015. Doi:10.1099/ijsem.0.000479

*. Masayuki Itoh, Yuki Kobayashi, Tzong-Yueh Chen, Takeshi Tokida, Manabu Fukui, Hisaya Kojima, Takeshi Miki, Ichiro Tayasu, Fuh-Kwo Shiah and Noboru Okuda. Effect of inter-annual variation in winter vertical mixing on CH4 dynamics in a subtropical reservoir. Journal of Geophysics Research-Biogeoscience 120: 1246-1261. 2015.

*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Inter-taxonomic differences in bacterioplankton community assembly in oligotrophic mountain lakes of east Japan. Aquatic Microbial Ecology 75: 251-257. 2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of a sulfur-oxidizing autotroph, Sulfuricella sp. strain T08, isolated from a freshwater lake. Genome Announcements 3: e00498-15. 2015.

*. Miho Watanabe, Hisaya Kojima, Manabu Fukui. Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultative anaerobic pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 65: 2378-2394.2015. Doi:10.1099/ijs.0.000270

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfoplanes formicivorans gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a brackish meromictic lake, and emended description of the family Desulfomicrobiaceae. International Journal of Systematic and Evolutionary Microbiology 65: 1902-1907.2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov.　International Journal of Systematic and Evolutionary Microbiology 65: 1504-1508.2015.

*. Yoshinori Takano, Hisaya Kojima, Eriko Takeda, Yusuke Yokoyama and Manabu Fukui. Biogeochemistry and limnology in Antarctic subglacial weathering: molecular evidence of the linkage between subglacial silica input and primary producers in a perennially ice-covered lake. Progress in Earth and Planetary Science 2: 8 (pp15). 2015.

*. Hisaya Kojima, Yoshitoshi Ogura, Nozomi Yamamoto, Tomoaki Togashi, Hiroshi Mori, Tomohiro Watanabe, Fumiko Nemoto, Ken Kurokawa, Tetsuya Hayashi and Manabu Fukui. Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence. The ISME Journal 9: 1166-1176.2015.

【2014年】
*. Hisaya Kojima, Riho Tokizawa and Manabu Fukui. Mizugakiibacter sediminis gen. nov., sp. nov., isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 3983-3987. 2014.

*. Hisaya Kojima, Riho Tokizawa, Kouhei Kogure, Yuki Kobayashi, Masayuki Itoh, Fuh-Kuw Shiah, Noboru Okuda and Manabu Fukui. Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer. Scientific Reports 4: 5728. DOI: 10.1038/srep05728.

*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria. Systematic and Applied Microbiology 37: 387-395.2014.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Proposal of Effusibacillus lacus gen. nov., sp. nov. and reclassification of Alicyclobacillus pohliae as Effusibacillus pohliae comb. nov. and Alicyclobacillus consociatus as Effusibacillus consociatus comb. nov.. International Journal of Systematic and Evolutionary Microbiology 64: 2770-2774.2014.

*. Kyoko Kubo, Hisaya Kojima, and Manabu Fukui. Vertical distribution of major sulfate-reducing bacteria in a eutrophic shallow meromictic lake. Systematic and Applied Microbiology 37: 510-519. 2014.

*. Hisaya Kojima, Johanna Moll, Joerg Kahnt, Manabu Fukui and Seigo Shima. A reversed genetic approach reveals the coenzyme specificity and the catalytic properties of three enzymes putatively involved in anaerobic oxidation of methane with sulfate. Environmental Microbiology 16: 3431-3442. 2014.

*. Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Identification of major planktonic sulfur oxidizers in stratified freshwater lake. PLoS ONE : e93877. 2014.

*. Hisaya Kojima and Manabu Fukui. Sulfurisoma sediminicola gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 1587-1592. 2014.

【2013年】

*. Tomohiro Watanabe, Hisaya Kojima, Yoshinori Takano and Manabu Fukui. Diversity of sulfur-cycle prokaryotes in freshwater lake sediments investigated using aprA as functional marker gene. Systematic and Applied Microbiology 36: 436-443.2013.

*. Yoshinori Iizuka, Barbara Delmonte, Ikumi Oyabu, Torbjoern Karlin, Valter Maggi, Amuel Albani, Manabu Fukui, Takeo Hondoh and Margareta Hansson. Sulphate and chloride aerosols during Holocene and last glacial periods preserved in the Talos Dome Ice Core, a peripheral region of Antarctica. Tellus B 65: 20197.2013.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfotomaculum intricatum sp. nov., a sulfate-reducer isolated from freshwater lake sediment. International Journal of Systematic and Evolutionary Microbiology 63: 3574-3578. 2013.

*.Takato Matsui, Hisaya Kojima, and Manabu Fukui. Effects of temperature on successive anaerobic decomposition of high-molecular organic matter under sulfate-reducing conditions. Estuarine, Coastal and Shelf Science 119: 139-144. 2013.

*. Akiko Kamono, Marianne Meyer, Thomas Cavalier-Smith,　Manabu Fukui and Anne Maria Fiore-Donno. Exploring slime mould diversity in high altitude forests and grasslands by environmental RNA analysis. FEMS Microbiology Ecology 84: 98-108. 2013.

*. Yuriko Higashioka, Hisaya Kojima, Miho Watanabe and Manabu Fukui. Desulfatitalea tepidiphila gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from tidal flat sediment. International Journal of Systematic and Evolutionary Microbiology 63: 761-765. 2013.

【2012年】

*. Yoshinori Takano, Jonathan James Tyler, Hisaya Kojima, Yusuke Yokoyama, Yukiko Tanabe, Takaharu Sato, Nanako O. Ogawa, Naohiko Ohkouchi, and Manabu Fukui. Holocene lake developments and glacial-isostatic uplift at Lake Skallen and Lake Oyako, Luetzow-Holm Bay, east Antarctica: based on biogeochemical facies and molecular signatures. Applied Geochemistry 27: 2546-2559. 2012.

*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Draft genome sequence of a psychrotolerant sulfur-oxidizing bacterium Sulfuricella denitrificans skB26 and proteomic insights into cold adaptation. Applied and Environmental Microbiology 78: 6545-6549. 2012.

*. Fumiko Nemoto, Hisaya Kojima, Akifumi Ohtaka and Manabu Fukui. Filamentous sulfur-oxidizing bacteria of the genus Thioploca from Lake Tonle Sap in Cambodia. Aquatic Microbial Ecology 66: 295-300. 2012.

*. Anne Maria Fiore-Donno, Akiko Kamono, Marianne Meyer, Martin Schnittler, Manabu Fukui and Thomas Cavalier-Smith. 18S rDNA phylogeny of Lanmproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa). PLoS ONE 7: e35359. 2012.

*. Hisaya Kojima, Masazumi Tsutsumi, Kanako Ishikawa, Tomoya Iwata, Marc Mussmann and Manabu Fukui. Distribution of putative denitrifying methane oxidizing bacteria of a freshwater lake. Systematic and Applied Microbiology 35: 233-238. 2012.

*. Yuriko Higashioka, Hisaya Kojima, and Manabu Fukui. Isolation and characterization of novel sulfate-reducing bacterium capable anaerobic degradation of p-xylene. Microbes and Environments 27: 273-277. 2012.

*. Masanaori Fujii, Hisaya Kojima, Tomoya Iwata, Jotaro Urabe and Manabu Fukui. Dissolved organic carbon as major environmental factor affecting bacterioplankton communities in mountain lakes of eastern Japan. Microbial Ecology 63: 496-508. 2012.

*. Masazumi Tsutsumi, Hisaya Kojima, and Manabu Fukui. Vertical profiles of abundance and potential activity of methane-oxidizing bacteria in sediment of Lake Biwa, Japan. Microbes and Environments 27: 67-71. 2012.

【2011年】

*. Fumiko Nemoto, Hisaya Kojima, and Manabu Fukui. Diversity of freshwater Thioploca species and their specific association with filamentous bacteria of the phylum Chloroflexi. Microbial Ecology 62：753-764.2011.

*. Hisaya Kojima, and Manabu Fukui. Sulfuritalea hydrogenivorans gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 61: 1651-1655. 2011.

*. Masazumi Tsutsumi, Tomoya Iwata, Hisaya Kojima, and Manabu Fukui. Spatiotemporal variations in an assemblage of closely related planktonic aerobic methanotrophs. Freshwater Biology 56: 342-351. 2011.

*. Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Temperature-dependent differences in community structure of bacteria involved in degradation of petroleum hydrocarbons under sulfate-reducing conditions. Journal of Applied and Microbiology　110: 314-322. 2011.

*. Kyoko Kubo, Katrin Knittel, Rudolf Amann, Manabu Fukui and Katsumi Matsuura. Sulfur-metabolizing bacteria populations in microbial mats of the Nakabusa hot spring, Japan. Systematic and Applied Microbiology 34: 293-302, 2011.

【2010年】

*. Hisaya Kojima, and Manabu Fukui. Sulfuricella denitrificans gen. nov., sp. nov., a novel sulfur-oxidizing autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60:2862-2866. 2010.

*. Keiichi Tabuchi, Hisaya Kojima, and Manabu Fukui. Seasonal changes in organic matter mineralization in a sublittoral sediment and temperature-driven decoupling of key processes. Microbial Ecology 60: 551-560. 2010.

*. Masanaori Fujii, Yoshinori Takano, Hisaya Kojima, Tamotsu Hoshino, Ryoichi Tanaka and Manabu Fukui. Microbial community structure, pigment composition, and nitrogen source of red snow in Antarctica. Microbial Ecology 59: 466-4775.2010.

*. Anne Fiore-Donno, Akiko Kamono, Ema Chao, Manabu Fukui and Thomas Cavalier-Smith. Invalidation of hyperamoeba by transferring its species to other genera of Myxogastria. Journal of Eukaryotic Biology 52: 189-196. 2010.

【2009年】

*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment : in press.

*. Akiko Kamono, Hisaya Kojima, Jun Matsumoto, Kimitaka Kawamura and Manabu Fukui. Airborne Myxomycete spore: Detection using molecular techniques. Naturwissenschaften　96: 147-151.2009.

*. Masazumi Tsutsumi, Hisaya Kojima, Shigeru Uemura, Kiyomi Ono, Akihiro Sumida, Toshihiko Hara and Manabu Fukui. Structure and activity of soil-inhabiting methanotrophic communities in northern forest of Japan. Soil Biology and Biochemistry　 41: 403-408.2009.

*. Yuriko Higashioka, Hisaya Kojima, Tatsunori Nakagawa, Shinya Sato and Manabu Fukui. A novel n-alkane-degrading bacterium as a minor member of p-xylene-degrading sulfate-reducing consortium. Biodegradation　20: 383-390.2009.　

*. Yuriko Higashioka, Hisaya Kojima, Shinya Sato, Manabu Fukui. Microbial community analysis at crude oil-contaminated soils targeting the 16S ribosomal RNA, xylM, C23O, and bcr genes. Journal of Applied Microbiology　107: 126-135. 2009.

*. Hisaya Kojima, Tomoya Iwata, and Manabu Fukui. DNA-based analysis of planktonic methanotrophs in a stratified lake. Freshwater Biology　54: 1501-1509.2009.

*. Akiko Kamono, Jun Matsumoto, Hisaya Kojima, and Manabu Fukui. Characterization of myxomycete communities in soil by reverse transcription polymerase chain reaction (RT-PCR)-based method. Soil Biology and Biochemistry 41: 1324-1330. 2009.

*. Hisaya Kojima, Haruo Fukuhara and Manabu Fukui. Community structure of microorganisms asssociated with reddish-brown iron-rich snow. Systematic and Applied Microbiology 32: 429-437. 2009.



チューボーですよ：学問への扉

2019-10-20 17:47:50 | 日記
先日の中学生の研究所訪問。ふと、中学校に入学した頃のことを思い出す。当時、雑誌の付録で万年筆がちょっぴり大人の気分にさせてくれたのだが。直に、暗澹たる気持ちに転ずる。万年筆からインクが漏れ出し、結局は長持ちせず。友達の何人かは、白いワイシャツのポケットに刺した万年筆からインク漏れ。しばらく、そのシミが取れず、付録万年筆の恐ろしさが残る。

それから８年後、教育実習である中学校の教壇に立つ。あの頃、何を考えていたのだろう？





そして、その４年後。ある大学で、生物学実習のティーチング・アシスタントをしていたら、実習生の一人から声をかけられる、「福井先生ですよね？」と。続けて、「○○中学校で教育実習に来て、理科を教えてくれた福井先生ですよね」。こんなところで再会するとは！

このことは、小学生や中学生たちを向き合う時の心構えを深く考える出来事であり、その後も常に意識していることでもある。

見学に来てくれた中学生たち。彼らの中から、将来科学者が生まれるかもしれない。

見学：熱い眼差し

2019-10-19 14:36:13 | 日記
この頃、私たちの低温研究室は、たいへんの繁昌である。

そろそろ夏休みが近づいて、構内の楡と芝生とが、鮮やかな初夏の緑のよそおいを完成するにつれて、例年のように、東京からの修学旅行の組がいくつも訪れて来る。そしてその時期が過ぎると、夏休みに入って、よく学会などがある。この近年は、夏の北海道で学会をすることが流行るらしく、毎年二つや三つの会があるのが普通になっている。

修学旅行の人たちも、学会のお客様方も、よく低温室を見に来られる。夏の北海道で雪の結晶を見るというのが、何か言葉の上からも、一つの魅力（アトラクション）になるのかもしれないが、要するに、分かりやすいからであろう。

　　　　　　　　＜中略＞

もっとも書いてみたら、まだ完成もしない研究のことを、むやみと広告ばかりしているようになって、少々気恥ずかしい思いもする。一年経って、このうちのどれもが立ち枯れになってしまったら、その方がもっと滑稽な昔語りになることであろう。
　　　　　　　　　　　　　中谷宇吉郎「低温室だより」より（1940年7月）

毎年、地元中学校からの研究所訪問。「環境学習」であったり、「職場体験」であったりと。中学生たちからは、素朴かつ鋭い質問をいくつも受ける、熱い眼差しで。我が身も、初心に立ち帰る瞬間でもある。　



金沢にて：日本陸水学会大会

2019-10-18 13:21:42 | 日記
9月27日から30日まで、金沢大学で開催された日本陸水学会に参加いたしました。



私にとっては初めて入会した学会でもあり、とても思い出深い学会なのですが、しばらくの間「幽霊会員」状態でした。

大会期間中に、河北潟を見学する機会を得て、いろいろと感じることも多く。ふと、卒業研究での調査地・佐潟を思いします。







加賀野菜レンコン。





白海老のかき揚げ入り白山そば。



久しぶりに陸水学会で口頭発表いたしましたが、質問もたくさん頂き、初心を思い出す良い機会となりました。





当研究室に所属する大学院修士課程の院生の皆さんも陸水学会で発表してみてはいかがでしょう。来年は、9月に東京で開催される予定です。


高知にて：寺田寅彦博士

2019-10-08 12:38:15 | 日記
10月というのに気温32℃ごえの高知。高知といえば、坂本龍馬なのだが。



寺田寅彦博士が住んでいた街でもあり、彼の記念館へ。



題字は、植物学者牧野富太郎博士。







街中にも、寺田博士。図書館等複合施設「オーテピア」にて。「ねえ君、ふしぎだと思いませんか」、問いかける寺田博士。



一連の会議と講演会を終え、札幌へ向かう。アンパンマンもお見送り。




研究論文update191006

2019-10-06 22:40:58 | ちかごろの研究論文
【2019年以降】

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Labilibaculum antarcticum sp. nov., a novel facultative anaerobic, psychrotorelant bacterium isolated from marine sediment of Antarctica. Antonie van Leeuwenhoek, in press.

*.Miho Watanabe, Manabu Fukui, Alexander Galushko and Jan Kuever. Genus Desulfosarcina. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment : in press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfatitalea. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfocucumis. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfocucuminaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfoplanes. In Bergey’s Manual of Systematics of Archaea and Bacteria. In press.

*. Melody Christine Cabrera-Ospino, Hisaya Kojima and Manabu Fukui. Arsenite oxidation by a newly isolated betaproteobacterium possessing arx genes and diversity of the arx gene cluster in bacterial genomes. Frontiers in Microbiology. In press

*. Tomohiro Watanabe, Hisaya Kojima, Kazuhiro Umezawa, Chiaki Hori, Taichi E. Takasuka, Tukako Kato and Manabu Fukui. Genomes of neutrophilic sulfur-oxidizing chemolithoautotrophs representing 9 proteobacterial species from 8 genera. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00316

*. Miho Watanabe, Hisaya Kojima, Kazuhiro Umezawa, and Manabu Fukui. Genomic characteristics of Desulfonema ishimotonii Tokyo 01T implying horizontal gene transfer among phylogenetically dispersed filamentous gliding bacteria. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00227

*. Mia Terashima, Keisuke Ohashi, Taichi E. Takasuka, Hisaya Kojima and Manabu Fukui. Antarctic heterotrophic bacterium Hymenobacter nivis P3T diplays light-enhanced growth and expresses putative proteins. Environmental Microbiology Reports 11:227-235. 2019. DOI:　10.1111/1758-2229.12702


【2018年】

*. Tatsunori Nakagawa, Yuki Tsuchiya, Shingo Ueda, Manabu Fukui and Reiji Takahashi. Eelgrass Sediment Microbiome as a Nitrous Oxide Sink in Brackish Lake Akkeshi, Japan. Microbes and Environments : in press. https://doi.org/10.1264/jsme2.ME18103

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov., and Desulfohalotomaculum gen. nov. International Journal of Systematic and Evolutionary Microbiology68(9):2891-2899.2018. doi: 10.1099/ijsem.0.002915.

*. Melody Cabrera Ospino, Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Diversity of anaerobic arsenite-oxidizing bacteria in low-salt environments analyzed with a newly develoed PCR-based method. Limnology 19: 177-183. 2018.　

*. Junji Matsuo, Shinji Nakamura, Torahiko Okubo, Manabu Fukui and Hiroyuki Yamaguchi. Long-term survival Naegleria polaris from Antarctica after 10 years storage at 4℃. Parasitology Research 117: 937-941. 2018.

*. Miho Watanabe , Hisaya Kojima and Manabu Fukui. Complete genome sequence of Marinifilaceae bacterium strain SPP2, isolated from Antarctic marine sediment. Marine Genomics 39: 1-2. 2018.


【2017年】

*. Miho Watanabe, Riho Tokizawa, Hisaya Kojima and Manabu Fukui. High-quality draft genome sequence of Effusibacillus lacus skLN, facultative anaerobic spore-former isolated from freshwater lake sediment. Standards in Genomic Science 17:64. 2017. DOI 10.1186/s4079-017-302-y.

*Rei Okamoto, Hisaya Kojima and Manabu Fukui. Acidocella aquatica sp. nov., a novel acidophilic heterotrophic bacterium isolated from a freshwater lake. International Journal of Systematics and Evolutionary Microbiology 67: 4773-4776. 2017. DOI 10.1099/ijsem.0.002376.

* Masayuki Itoh, Hisaya Kojima, Pei-Chi Ho, Chun-Wei Chang, Tzong-Yueh Chen, Silver Sung-Yun Hsiao, Yuki Kobayashi, Megumi Fujibayashi, Shuh-Ji Kao, Chih-hao Hsieh, Manabu Fukui, Noboru Okuda, Takeshi Miki and Fuh-Kwo Shiah. Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan. Ecological Research 32: 861-871. 2017. DOI 10.1007/s11284-017-1502-z.

*. Mia Terashima, Kazuhiro Umezawa, Shoichi Mori, Hisaya Kojima and Manabu Fukui. Microbial community structure analysis of colored snow from alpine snowfield in northern Japan reveals the prevalence of Betaproteobacteria with snow algae. Frontiers in Microbiology 8: 1481. doi:10.3389/fmicb.2017.01481

*. Hisaya Kojima, Miho Watanabe and Manabu Fukui. Sulfurivermis fontis gen. nov., sp. nov., a novel sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov. International Journal of Systematic and Evolutionary Microbiology 67: 3458-3461. 2017.

*. Tomohiro Watanabe, Aya Miura, Tomoya Iwata, Hisaya Kojima and Manabu Fukui. Dominance of Sulfuritalea species in nitrate-depleted water of a stratified freshwater lake and arsenate respiration ability within the genus. Environmental Microbiology Reports 9: 522-527. 2017.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Desulfoplanes formicivorans Pf12BT, a sulfate-reducing bacterium of the family Desulfomicrobiaceae. Standards in Genomic Sciences 2: 34. 2017.DOI:

*. Miho Watanabe, Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Desulfosarcina widdelii sp. nov. and Desulfosarcina alkanivorans sp. nov., hydrocarbon-degrading sulfate-reducing bacteria isolated from marine sediment and emended description of the genus Desulfosarcina. International Journal of Systematic and Evolutionary Microbiology 67: 2994-2997. 2017.DOI:

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfocucumis palustris gen. nov., sp. nov., a mesophilic sulfate reducer belonging to the Desulfotomaculum subcluster Ig. International Journal of Systematic and Evolutionary Microbiology 67: 2679-2682. 2017. DOI:

*. Hisaya Kojima, Miho Watanabe, and Manabu Fukui. Sulfuritortus calidifontis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a hot spring microbial mat. International Journal of Systematic and Evolutionary Microbiology 67:1355-1358. 2017. DOI: 10.1099/ijsem.0.001813


【2016年】

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui.Identity of major sulfur cycle prokaryotes in freshwater lake ecosystems revealed by a comprenensive phylogenetic study of the dissimilatory adenylylsulfate reductase. Scientific Reports 6: 36262. 2016.

*. Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima and Manabu Fukui. The complete genome sequences of sulfur-oxidizing gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T. Standards in Genomic Sciences 11: 71. 2016.

*. Hisaya Kojima, Miho Watanabe, Riho Tokizawa, Arisa Shinohara and Manabu Fukui. Hymenobacter nivis sp. nov., isolated from red snow in Antarctica. International Journal of Systematic and Evolutionary Microbiology 66: 4821-4825. 2016. DOI: 10.1099/ijsem.0.001435

*. Yuki Kobayashi, Hisaya Kojima, Masayuki Itoh, Noboru Okuda, Manabu Fukui and Fuh-Kwo Shiah. Abundance of planktonic methane-oxidizing bacteria in a subtropical reservoir. Plankton and Benthos Research 11: 144-146.2016. DOI: 10.3800/pbr.11.144

*. Hisaya Kojima and Manabu Fukui. Sulfuriflexus mobilis gen. nov., sp. nov., a sulfur-oxidizing bacterium isolated from a brackish lake sediment. International Journal of Systematic and Evolutionary Microbiology 66: 3515-3518.2016. doi: 10.1099/ijsem.0.001227

*. Rachel Rudd, Jonathan Tyler, John Tibby, Yusuke Yokoyama, Ines Tavernier, Elie Verleyen, Manabu Fukui and Yoshinori Takano. A diatom inferred of lake hydrological variability during the last 900 years in Luetzow-Holm Bay, East Antarctica. Journal of Quaternary Science 31: 114-125. 2016. DOI: 10.1002/jqs.2845


*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula thiophila sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium, and correction of the name Sulfuriferula plumbophilus Watanabe, Kojima and Fukui 2015 to Sulfuriferula plumbophila corrig.　International Journal of Systematic and Evolutionary Microbiology 66: 2041-2045.2016. Doi: 10.1099/ijsem.0.000988.

*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Planktonic bacterial communities in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 145-169.Springer. 2016.

*. Tomoya Iwata, Naoki Mochizuki, Takao Suzuki, Ayato Kohzu, Hisaya Kojima, Manabu Fukui and Jotaro Urabe. Roles of terrestrial carbon subsidies to aquatic community metabolism in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 115-144. Springer. 2016.

*. Tomohiro Watanabe, Aya Miura, Arisa Shinohara, Hisaya Kojima and Manabu Fukui. Thermithiobacillus plumbiphilus sp. nov., a sulfur-oxidizing bacterium isolated from lead sulfide.　International Journal of Sysytematic and Evolutionary Microbiology 66: 1986-1989.2016. Doi: 10.1099/ijsem.0.000972.

*. Hisaya Kojima, Kazuhiro Umezawa and Manabu Fukui. Caldimicrobium thiodismutans sp. nov., a sulfur-disproportionating bacterium isolated from a hot spring, and emended description of the genus Caldimicrobium. International Journal of Systematics and Evolutionary Microbiology 66: 1828-1831.2016. Doi: 10.1099/ijsem.0.000947.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Complete genome sequence and cell structure of Limnochorda pilosa, a Gram negative spore former whithin the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 66: 1330-1339. 2016. Doi:10.1099/ijsem.0.000881.

*. Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Sulfuricaulis limicola gen. nov., sp. nov., a novel sulfur oxidizer from a lake. International Journal of Systematic and Evolutionary Microbiology 66: 266-270. 2016. Doi: 10.1099/ijsem.0.000709.

*. Tomohiro Watanabe, Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurirhabdus autotrophica gen. nov., sp. nov., isolated from a freshwater lake.　International Journal of Systematic and Evolutionary Microbiology 66: 113-117.2016. Doi: 10.1099/ijsem.0.000679.


【2015年】

*. Yuriko Higashioka, Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Draft genome sequence of Desulfatitalea tepidiphila S28bFT. Genome Announcements 3: e01326-15. 2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Mizugakiibacter sediminis skMP5T. Genome Announcements 3: e01185-15. 2015.

*. Ikumi Oyabu, Yoshinori Iizuka, Hubertus Fischer, Simon Schüpbach, Gideon Gfeller, Anders Svensson, Manabu Fukui, Jørgen Peder Steffensen, and Margareta Hansson. Chemical compositions of solid particles present in the Greenland NEEM ice core over the last 110,000 years. Journal of Geophysical Research-Atmospheres 120: 9789-9813.2015. DOI: 10.1002/2015JD023290

*. Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurifustis variabilis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a lake, and proposal of Acidiferrobacteraceae fam. nov. and Acidiferrobacterales ord. nov. International Journal of Systematic and Evolutionary Microbiology 65: 3709-3713.2015. Doi:10.1099/ijsem.0.000479

*. Masayuki Itoh, Yuki Kobayashi, Tzong-Yueh Chen, Takeshi Tokida, Manabu Fukui, Hisaya Kojima, Takeshi Miki, Ichiro Tayasu, Fuh-Kwo Shiah and Noboru Okuda. Effect of inter-annual variation in winter vertical mixing on CH4 dynamics in a subtropical reservoir. Journal of Geophysics Research-Biogeoscience 120: 1246-1261. 2015.

*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Inter-taxonomic differences in bacterioplankton community assembly in oligotrophic mountain lakes of east Japan. Aquatic Microbial Ecology 75: 251-257. 2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of a sulfur-oxidizing autotroph, Sulfuricella sp. strain T08, isolated from a freshwater lake. Genome Announcements 3: e00498-15. 2015.

*. Miho Watanabe, Hisaya Kojima, Manabu Fukui. Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultative anaerobic pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 65: 2378-2394.2015. Doi:10.1099/ijs.0.000270

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfoplanes formicivorans gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a brackish meromictic lake, and emended description of the family Desulfomicrobiaceae. International Journal of Systematic and Evolutionary Microbiology 65: 1902-1907.2015.

*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov.　International Journal of Systematic and Evolutionary Microbiology 65: 1504-1508.2015.

*. Yoshinori Takano, Hisaya Kojima, Eriko Takeda, Yusuke Yokoyama and Manabu Fukui. Biogeochemistry and limnology in Antarctic subglacial weathering: molecular evidence of the linkage between subglacial silica input and primary producers in a perennially ice-covered lake. Progress in Earth and Planetary Science 2: 8 (pp15). 2015.

*. Hisaya Kojima, Yoshitoshi Ogura, Nozomi Yamamoto, Tomoaki Togashi, Hiroshi Mori, Tomohiro Watanabe, Fumiko Nemoto, Ken Kurokawa, Tetsuya Hayashi and Manabu Fukui. Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence. The ISME Journal 9: 1166-1176.2015.

【2014年】
*. Hisaya Kojima, Riho Tokizawa and Manabu Fukui. Mizugakiibacter sediminis gen. nov., sp. nov., isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 3983-3987. 2014.

*. Hisaya Kojima, Riho Tokizawa, Kouhei Kogure, Yuki Kobayashi, Masayuki Itoh, Fuh-Kuw Shiah, Noboru Okuda and Manabu Fukui. Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer. Scientific Reports 4: 5728. DOI: 10.1038/srep05728.

*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria. Systematic and Applied Microbiology 37: 387-395.2014.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Proposal of Effusibacillus lacus gen. nov., sp. nov. and reclassification of Alicyclobacillus pohliae as Effusibacillus pohliae comb. nov. and Alicyclobacillus consociatus as Effusibacillus consociatus comb. nov.. International Journal of Systematic and Evolutionary Microbiology 64: 2770-2774.2014.

*. Kyoko Kubo, Hisaya Kojima, and Manabu Fukui. Vertical distribution of major sulfate-reducing bacteria in a eutrophic shallow meromictic lake. Systematic and Applied Microbiology 37: 510-519. 2014.

*. Hisaya Kojima, Johanna Moll, Joerg Kahnt, Manabu Fukui and Seigo Shima. A reversed genetic approach reveals the coenzyme specificity and the catalytic properties of three enzymes putatively involved in anaerobic oxidation of methane with sulfate. Environmental Microbiology 16: 3431-3442. 2014.

*. Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Identification of major planktonic sulfur oxidizers in stratified freshwater lake. PLoS ONE : e93877. 2014.

*. Hisaya Kojima and Manabu Fukui. Sulfurisoma sediminicola gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 1587-1592. 2014.

【2013年】

*. Tomohiro Watanabe, Hisaya Kojima, Yoshinori Takano and Manabu Fukui. Diversity of sulfur-cycle prokaryotes in freshwater lake sediments investigated using aprA as functional marker gene. Systematic and Applied Microbiology 36: 436-443.2013.

*. Yoshinori Iizuka, Barbara Delmonte, Ikumi Oyabu, Torbjoern Karlin, Valter Maggi, Amuel Albani, Manabu Fukui, Takeo Hondoh and Margareta Hansson. Sulphate and chloride aerosols during Holocene and last glacial periods preserved in the Talos Dome Ice Core, a peripheral region of Antarctica. Tellus B 65: 20197.2013.

*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfotomaculum intricatum sp. nov., a sulfate-reducer isolated from freshwater lake sediment. International Journal of Systematic and Evolutionary Microbiology 63: 3574-3578. 2013.

*.Takato Matsui, Hisaya Kojima, and Manabu Fukui. Effects of temperature on successive anaerobic decomposition of high-molecular organic matter under sulfate-reducing conditions. Estuarine, Coastal and Shelf Science 119: 139-144. 2013.

*. Akiko Kamono, Marianne Meyer, Thomas Cavalier-Smith,　Manabu Fukui and Anne Maria Fiore-Donno. Exploring slime mould diversity in high altitude forests and grasslands by environmental RNA analysis. FEMS Microbiology Ecology 84: 98-108. 2013.

*. Yuriko Higashioka, Hisaya Kojima, Miho Watanabe and Manabu Fukui. Desulfatitalea tepidiphila gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from tidal flat sediment. International Journal of Systematic and Evolutionary Microbiology 63: 761-765. 2013.

【2012年】

*. Yoshinori Takano, Jonathan James Tyler, Hisaya Kojima, Yusuke Yokoyama, Yukiko Tanabe, Takaharu Sato, Nanako O. Ogawa, Naohiko Ohkouchi, and Manabu Fukui. Holocene lake developments and glacial-isostatic uplift at Lake Skallen and Lake Oyako, Luetzow-Holm Bay, east Antarctica: based on biogeochemical facies and molecular signatures. Applied Geochemistry 27: 2546-2559. 2012.

*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Draft genome sequence of a psychrotolerant sulfur-oxidizing bacterium Sulfuricella denitrificans skB26 and proteomic insights into cold adaptation. Applied and Environmental Microbiology 78: 6545-6549. 2012.

*. Fumiko Nemoto, Hisaya Kojima, Akifumi Ohtaka and Manabu Fukui. Filamentous sulfur-oxidizing bacteria of the genus Thioploca from Lake Tonle Sap in Cambodia. Aquatic Microbial Ecology 66: 295-300. 2012.

*. Anne Maria Fiore-Donno, Akiko Kamono, Marianne Meyer, Martin Schnittler, Manabu Fukui and Thomas Cavalier-Smith. 18S rDNA phylogeny of Lanmproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa). PLoS ONE 7: e35359. 2012.

*. Hisaya Kojima, Masazumi Tsutsumi, Kanako Ishikawa, Tomoya Iwata, Marc Mussmann and Manabu Fukui. Distribution of putative denitrifying methane oxidizing bacteria of a freshwater lake. Systematic and Applied Microbiology 35: 233-238. 2012.

*. Yuriko Higashioka, Hisaya Kojima, and Manabu Fukui. Isolation and characterization of novel sulfate-reducing bacterium capable anaerobic degradation of p-xylene. Microbes and Environments 27: 273-277. 2012.

*. Masanaori Fujii, Hisaya Kojima, Tomoya Iwata, Jotaro Urabe and Manabu Fukui. Dissolved organic carbon as major environmental factor affecting bacterioplankton communities in mountain lakes of eastern Japan. Microbial Ecology 63: 496-508. 2012.

*. Masazumi Tsutsumi, Hisaya Kojima, and Manabu Fukui. Vertical profiles of abundance and potential activity of methane-oxidizing bacteria in sediment of Lake Biwa, Japan. Microbes and Environments 27: 67-71. 2012.

【2011年】

*. Fumiko Nemoto, Hisaya Kojima, and Manabu Fukui. Diversity of freshwater Thioploca species and their specific association with filamentous bacteria of the phylum Chloroflexi. Microbial Ecology 62：753-764.2011.

*. Hisaya Kojima, and Manabu Fukui. Sulfuritalea hydrogenivorans gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 61: 1651-1655. 2011.

*. Masazumi Tsutsumi, Tomoya Iwata, Hisaya Kojima, and Manabu Fukui. Spatiotemporal variations in an assemblage of closely related planktonic aerobic methanotrophs. Freshwater Biology 56: 342-351. 2011.

*. Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Temperature-dependent differences in community structure of bacteria involved in degradation of petroleum hydrocarbons under sulfate-reducing conditions. Journal of Applied and Microbiology　110: 314-322. 2011.

*. Kyoko Kubo, Katrin Knittel, Rudolf Amann, Manabu Fukui and Katsumi Matsuura. Sulfur-metabolizing bacteria populations in microbial mats of the Nakabusa hot spring, Japan. Systematic and Applied Microbiology 34: 293-302, 2011.

【2010年】

*. Hisaya Kojima, and Manabu Fukui. Sulfuricella denitrificans gen. nov., sp. nov., a novel sulfur-oxidizing autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60:2862-2866. 2010.

*. Keiichi Tabuchi, Hisaya Kojima, and Manabu Fukui. Seasonal changes in organic matter mineralization in a sublittoral sediment and temperature-driven decoupling of key processes. Microbial Ecology 60: 551-560. 2010.

*. Masanaori Fujii, Yoshinori Takano, Hisaya Kojima, Tamotsu Hoshino, Ryoichi Tanaka and Manabu Fukui. Microbial community structure, pigment composition, and nitrogen source of red snow in Antarctica. Microbial Ecology 59: 466-4775.2010.

*. Anne Fiore-Donno, Akiko Kamono, Ema Chao, Manabu Fukui and Thomas Cavalier-Smith. Invalidation of hyperamoeba by transferring its species to other genera of Myxogastria. Journal of Eukaryotic Biology 52: 189-196. 2010.

【2009年】

*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment : in press.

*. Akiko Kamono, Hisaya Kojima, Jun Matsumoto, Kimitaka Kawamura and Manabu Fukui. Airborne Myxomycete spore: Detection using molecular techniques. Naturwissenschaften　96: 147-151.2009.

*. Masazumi Tsutsumi, Hisaya Kojima, Shigeru Uemura, Kiyomi Ono, Akihiro Sumida, Toshihiko Hara and Manabu Fukui. Structure and activity of soil-inhabiting methanotrophic communities in northern forest of Japan. Soil Biology and Biochemistry　 41: 403-408.2009.

*. Yuriko Higashioka, Hisaya Kojima, Tatsunori Nakagawa, Shinya Sato and Manabu Fukui. A novel n-alkane-degrading bacterium as a minor member of p-xylene-degrading sulfate-reducing consortium. Biodegradation　20: 383-390.2009.　

*. Yuriko Higashioka, Hisaya Kojima, Shinya Sato, Manabu Fukui. Microbial community analysis at crude oil-contaminated soils targeting the 16S ribosomal RNA, xylM, C23O, and bcr genes. Journal of Applied Microbiology　107: 126-135. 2009.

*. Hisaya Kojima, Tomoya Iwata, and Manabu Fukui. DNA-based analysis of planktonic methanotrophs in a stratified lake. Freshwater Biology　54: 1501-1509.2009.

*. Akiko Kamono, Jun Matsumoto, Hisaya Kojima, and Manabu Fukui. Characterization of myxomycete communities in soil by reverse transcription polymerase chain reaction (RT-PCR)-based method. Soil Biology and Biochemistry 41: 1324-1330. 2009.

*. Hisaya Kojima, Haruo Fukuhara and Manabu Fukui. Community structure of microorganisms asssociated with reddish-brown iron-rich snow. Systematic and Applied Microbiology 32: 429-437. 2009.