【2022年以降】
*. Tomohiro Watanabe, Kyoko Kubo, Yoshiharu Kamei, Hisaya Kojima and Manabu Fukui. Dissimilatory microbial sulfur and methane metabolism in the water column of a shallow meromictic lake. Systematics and Applied Microbiology 71: 005138. 2022.
*. Ayaka Takahashi, Hisaya Kojima, Miho Watanabe, and Manabu Fukui. Pseudodesulfovibrio sediminis sp. nov., a mesophilic and neutrophilic sulfate-reducing bacterium isolated from sediment of a brackish lake. Archive of Microbiology 204: 307. 2022. https://doi.org/10.1007/s00203-022-02870-5
【2021年】
*. Toshihide Hirao, Masanori Fujii, Nobuhiko Shigyo, Hisaya Kojima and Manabu Fukui. Influence of understory vegetation on soil bacterial communities and nitrogen cycling gene abundance in cool-temperate and sub-alpine forests along an elevational gradient. Pedobiologia – International Journal of Soil Biology 87-88: 150746. 2021. https://doi.org/10.1016/j.pedobo.2021.150746
*. Miho Watanabe, Hisaya Kojima, Kunihiro Okano and Manabu Fukui. Mariniplasma anaerobium gen. nov., sp. Nov., a novel anaerobic marine mollicute, and proposal of three novel genera to reclassify members of Acholeplasma clusters II-IV. International Journal of Systematic and Evolutionary Microbiology 71: 005138. 2021. https://doi.org/10.1099/ijsem.0.005138
*. Takeshi Miyadera, Hisaya Kojima and Manabu Fukui. Methyloradius palustris gen. nov., sp. nov., a methanol-oxidizing bacterium isolated from snow. Archives of Microbiology 203: 5715-5721. 2021. https://doi.org/10.1007/s00203-021-02559-1
*. Kazuhiro Umezawa, Hisaya Kojima, Yukako Kato, Manabu Fukui. Dissulfurispira thermophila gen. nov., sp. nov., a thermophilic chemolithoautotroph growing by sulfur disproportionation, and proposal of novel taxa in the phylum Nitrospirota to reclassify the genus Thermodesulfovibrio. Systematic and Applied Microbiology 44: 126184. 2021. https://doi.org/10.1016/j.syapm.2021.126184
*. Jun Mochizuki, Hisaya Kojima and Manabu Fukui. Thiosulfativibrio zosterae gen. nov., sp. nov. and Thiosulfatimonas sediminis gen. nov., sp. nov. Arcives of Microbiology 203: 951-957. 2021. DOI 10.1007/s00203-020-02090-9.
【2020年】
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulforamulus gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Aquipluma nitroreducens gen.nov. sp.nov., a novel facultatively anaerobic bacterium isolated from freshwater lake. International Journal pf Systematic and Evolutionary Microbiology 70: 6408-6413. DOI 10.1099/ijsem.0.004551
*. Hisaya Kojima, Mamoru Kanda, Kazuhiro Umezawa and Manabu Fukui. Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae. Archives of Microbiology 203: 317-323. 2020. https://doi.org/10.1007/s00203-020-02029-0
*. Miho Watanabe, Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay. Systematics and Applied Microbiology 43: . 2020. https://doi.org/10.1016/j.syapm.2020.126109.
*. Kazuhiro Umezawa, Hisaya Kojima, Yukako Kato and Manabu Fukui. Disproportionatoin of inorganic sulfur compounds by a novel autotrophic bacterium belonging to Nitrospirota. Systematics and Applied Microbiology, 43: . 2020. https://doi.org/10.1016/j.syapm.2020.126110
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfoplanaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfofundulaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfotohalotomaculaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui, Alexander Galushko and Jan Kuever. Desulfosarcinaeceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfococcaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Hisaya Kojima, Jun Mochizuki and Manabu Fukui. Sulfuriferula nivalis sp. nov., a sulfur oxidizer isolated from snow and emended description of Sulfuriferula plumbiphila. International Journal of Systematic and Evolutionary Microbiology 70: 3273-3297. 2020. DOI 10.1099/ijsem.0.004166.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Aerosticca soli gen. nov., sp. nov., an aerobic gammaproteobacterium isolated from crude oil-contaminated soil. Archives of Microbiology 202: 1069-1079. 2020. doi.org/10.1007/s00203-020-01819-w.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Labilibaculum antarcticum sp. nov., a novel facultative anaerobic, psychrotorelant bacterium isolated from marine sediment of Antarctica. Antonie van Leeuwenhoek 113: 349-355. 2020.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfotomaculum. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfocanica gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfomaculaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria.2020, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfurisporaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfallaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfoscipio gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfallas. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfobara. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfovirgula. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfonema. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, Alexander Galushko and Jan Kuever. Genus Desulfosarcina. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
【2019年】
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfatitalea. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfocucumis. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfocucuminaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfoplanes. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Hisaya Kojima and Manabu Fukui. Thiomicrorhabdus aquaedulcis sp. nov., a sulfur-oxidizing bacterium isolated from lake water. International Journal pf Systematic and Evolutionary Microbiology 69: 2849-2853. 2019. https://doi.org/10.1099/ijsem.0.003567
*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment 696:133916 . 2019. DOI: 10.1016/j.scitotenv.2019.133916 .
*. Melody Christine Cabrera-Ospino, Hisaya Kojima and Manabu Fukui. Arsenite oxidation by a newly isolated betaproteobacterium possessing arx genes and diversity of the arx gene cluster in bacterial genomes. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.01210
*. Tomohiro Watanabe, Hisaya Kojima, Kazuhiro Umezawa, Chiaki Hori, Taichi E. Takasuka, Tukako Kato and Manabu Fukui. Genomes of neutrophilic sulfur-oxidizing chemolithoautotrophs representing 9 proteobacterial species from 8 genera. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00316
*. Miho Watanabe, Hisaya Kojima, Kazuhiro Umezawa, and Manabu Fukui. Genomic characteristics of Desulfonema ishimotonii Tokyo 01T implying horizontal gene transfer among phylogenetically dispersed filamentous gliding bacteria. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00227
*. Mia Terashima, Keisuke Ohashi, Taichi E. Takasuka, Hisaya Kojima and Manabu Fukui. Antarctic heterotrophic bacterium Hymenobacter nivis P3T diplays light-enhanced growth and expresses putative proteins. Environmental Microbiology Reports 11:227-235. 2019. DOI: 10.1111/1758-2229.12702
*. Tatsunori Nakagawa, Yuki Tsuchiya, Shingo Ueda, Manabu Fukui and Reiji Takahashi. Eelgrass Sediment Microbiome as a Nitrous Oxide Sink in Brackish Lake Akkeshi, Japan. Microbes and Environments 67(1):13-22.2019. https://doi.org/10.1264/jsme2.ME18103
【2018年】
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov., and Desulfohalotomaculum gen. nov. International Journal of Systematic and Evolutionary Microbiology68(9):2891-2899.2018. doi: 10.1099/ijsem.0.002915.
*. Melody Cabrera Ospino, Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Diversity of anaerobic arsenite-oxidizing bacteria in low-salt environments analyzed with a newly develoed PCR-based method. Limnology 19: 177-183. 2018.
*. Junji Matsuo, Shinji Nakamura, Torahiko Okubo, Manabu Fukui and Hiroyuki Yamaguchi. Long-term survival Naegleria polaris from Antarctica after 10 years storage at 4℃. Parasitology Research 117: 937-941. 2018.
*. Miho Watanabe , Hisaya Kojima and Manabu Fukui. Complete genome sequence of Marinifilaceae bacterium strain SPP2, isolated from Antarctic marine sediment. Marine Genomics 39: 1-2. 2018.
【2017年】
*. Miho Watanabe, Riho Tokizawa, Hisaya Kojima and Manabu Fukui. High-quality draft genome sequence of Effusibacillus lacus skLN, facultative anaerobic spore-former isolated from freshwater lake sediment. Standards in Genomic Science 17:64. 2017. DOI 10.1186/s4079-017-302-y.
*Rei Okamoto, Hisaya Kojima and Manabu Fukui. Acidocella aquatica sp. nov., a novel acidophilic heterotrophic bacterium isolated from a freshwater lake. International Journal of Systematics and Evolutionary Microbiology 67: 4773-4776. 2017. DOI 10.1099/ijsem.0.002376.
* Masayuki Itoh, Hisaya Kojima, Pei-Chi Ho, Chun-Wei Chang, Tzong-Yueh Chen, Silver Sung-Yun Hsiao, Yuki Kobayashi, Megumi Fujibayashi, Shuh-Ji Kao, Chih-hao Hsieh, Manabu Fukui, Noboru Okuda, Takeshi Miki and Fuh-Kwo Shiah. Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan. Ecological Research 32: 861-871. 2017. DOI 10.1007/s11284-017-1502-z.
*. Mia Terashima, Kazuhiro Umezawa, Shoichi Mori, Hisaya Kojima and Manabu Fukui. Microbial community structure analysis of colored snow from alpine snowfield in northern Japan reveals the prevalence of Betaproteobacteria with snow algae. Frontiers in Microbiology 8: 1481. doi:10.3389/fmicb.2017.01481
*. Hisaya Kojima, Miho Watanabe and Manabu Fukui. Sulfurivermis fontis gen. nov., sp. nov., a novel sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov. International Journal of Systematic and Evolutionary Microbiology 67: 3458-3461. 2017.
*. Tomohiro Watanabe, Aya Miura, Tomoya Iwata, Hisaya Kojima and Manabu Fukui. Dominance of Sulfuritalea species in nitrate-depleted water of a stratified freshwater lake and arsenate respiration ability within the genus. Environmental Microbiology Reports 9: 522-527. 2017.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Desulfoplanes formicivorans Pf12BT, a sulfate-reducing bacterium of the family Desulfomicrobiaceae. Standards in Genomic Sciences 2: 34. 2017.DOI:
*. Miho Watanabe, Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Desulfosarcina widdelii sp. nov. and Desulfosarcina alkanivorans sp. nov., hydrocarbon-degrading sulfate-reducing bacteria isolated from marine sediment and emended description of the genus Desulfosarcina. International Journal of Systematic and Evolutionary Microbiology 67: 2994-2997. 2017.DOI:
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfocucumis palustris gen. nov., sp. nov., a mesophilic sulfate reducer belonging to the Desulfotomaculum subcluster Ig. International Journal of Systematic and Evolutionary Microbiology 67: 2679-2682. 2017. DOI:
*. Hisaya Kojima, Miho Watanabe, and Manabu Fukui. Sulfuritortus calidifontis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a hot spring microbial mat. International Journal of Systematic and Evolutionary Microbiology 67:1355-1358. 2017. DOI: 10.1099/ijsem.0.001813
【2016年】
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui.Identity of major sulfur cycle prokaryotes in freshwater lake ecosystems revealed by a comprenensive phylogenetic study of the dissimilatory adenylylsulfate reductase. Scientific Reports 6: 36262. 2016.
*. Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima and Manabu Fukui. The complete genome sequences of sulfur-oxidizing gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T. Standards in Genomic Sciences 11: 71. 2016.
*. Hisaya Kojima, Miho Watanabe, Riho Tokizawa, Arisa Shinohara and Manabu Fukui. Hymenobacter nivis sp. nov., isolated from red snow in Antarctica. International Journal of Systematic and Evolutionary Microbiology 66: 4821-4825. 2016. DOI: 10.1099/ijsem.0.001435
*. Yuki Kobayashi, Hisaya Kojima, Masayuki Itoh, Noboru Okuda, Manabu Fukui and Fuh-Kwo Shiah. Abundance of planktonic methane-oxidizing bacteria in a subtropical reservoir. Plankton and Benthos Research 11: 144-146.2016. DOI: 10.3800/pbr.11.144
*. Hisaya Kojima and Manabu Fukui. Sulfuriflexus mobilis gen. nov., sp. nov., a sulfur-oxidizing bacterium isolated from a brackish lake sediment. International Journal of Systematic and Evolutionary Microbiology 66: 3515-3518.2016. doi: 10.1099/ijsem.0.001227
*. Rachel Rudd, Jonathan Tyler, John Tibby, Yusuke Yokoyama, Ines Tavernier, Elie Verleyen, Manabu Fukui and Yoshinori Takano. A diatom inferred of lake hydrological variability during the last 900 years in Luetzow-Holm Bay, East Antarctica. Journal of Quaternary Science 31: 114-125. 2016. DOI: 10.1002/jqs.2845
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula thiophila sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium, and correction of the name Sulfuriferula plumbophilus Watanabe, Kojima and Fukui 2015 to Sulfuriferula plumbophila corrig. International Journal of Systematic and Evolutionary Microbiology 66: 2041-2045.2016. Doi: 10.1099/ijsem.0.000988.
*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Planktonic bacterial communities in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 145-169.Springer. 2016.
*. Tomoya Iwata, Naoki Mochizuki, Takao Suzuki, Ayato Kohzu, Hisaya Kojima, Manabu Fukui and Jotaro Urabe. Roles of terrestrial carbon subsidies to aquatic community metabolism in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 115-144. Springer. 2016.
*. Tomohiro Watanabe, Aya Miura, Arisa Shinohara, Hisaya Kojima and Manabu Fukui. Thermithiobacillus plumbiphilus sp. nov., a sulfur-oxidizing bacterium isolated from lead sulfide. International Journal of Sysytematic and Evolutionary Microbiology 66: 1986-1989.2016. Doi: 10.1099/ijsem.0.000972.
*. Hisaya Kojima, Kazuhiro Umezawa and Manabu Fukui. Caldimicrobium thiodismutans sp. nov., a sulfur-disproportionating bacterium isolated from a hot spring, and emended description of the genus Caldimicrobium. International Journal of Systematics and Evolutionary Microbiology 66: 1828-1831.2016. Doi: 10.1099/ijsem.0.000947.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Complete genome sequence and cell structure of Limnochorda pilosa, a Gram negative spore former whithin the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 66: 1330-1339. 2016. Doi:10.1099/ijsem.0.000881.
*. Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Sulfuricaulis limicola gen. nov., sp. nov., a novel sulfur oxidizer from a lake. International Journal of Systematic and Evolutionary Microbiology 66: 266-270. 2016. Doi: 10.1099/ijsem.0.000709.
*. Tomohiro Watanabe, Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurirhabdus autotrophica gen. nov., sp. nov., isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 66: 113-117.2016. Doi: 10.1099/ijsem.0.000679.
【2015年】
*. Yuriko Higashioka, Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Draft genome sequence of Desulfatitalea tepidiphila S28bFT. Genome Announcements 3: e01326-15. 2015.
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Mizugakiibacter sediminis skMP5T. Genome Announcements 3: e01185-15. 2015.
*. Ikumi Oyabu, Yoshinori Iizuka, Hubertus Fischer, Simon Schüpbach, Gideon Gfeller, Anders Svensson, Manabu Fukui, Jørgen Peder Steffensen, and Margareta Hansson. Chemical compositions of solid particles present in the Greenland NEEM ice core over the last 110,000 years. Journal of Geophysical Research-Atmospheres 120: 9789-9813.2015. DOI: 10.1002/2015JD023290
*. Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurifustis variabilis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a lake, and proposal of Acidiferrobacteraceae fam. nov. and Acidiferrobacterales ord. nov. International Journal of Systematic and Evolutionary Microbiology 65: 3709-3713.2015. Doi:10.1099/ijsem.0.000479
*. Masayuki Itoh, Yuki Kobayashi, Tzong-Yueh Chen, Takeshi Tokida, Manabu Fukui, Hisaya Kojima, Takeshi Miki, Ichiro Tayasu, Fuh-Kwo Shiah and Noboru Okuda. Effect of inter-annual variation in winter vertical mixing on CH4 dynamics in a subtropical reservoir. Journal of Geophysics Research-Biogeoscience 120: 1246-1261. 2015.
*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Inter-taxonomic differences in bacterioplankton community assembly in oligotrophic mountain lakes of east Japan. Aquatic Microbial Ecology 75: 251-257. 2015.
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of a sulfur-oxidizing autotroph, Sulfuricella sp. strain T08, isolated from a freshwater lake. Genome Announcements 3: e00498-15. 2015.
*. Miho Watanabe, Hisaya Kojima, Manabu Fukui. Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultative anaerobic pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 65: 2378-2394.2015. Doi:10.1099/ijs.0.000270
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfoplanes formicivorans gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a brackish meromictic lake, and emended description of the family Desulfomicrobiaceae. International Journal of Systematic and Evolutionary Microbiology 65: 1902-1907.2015.
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov. International Journal of Systematic and Evolutionary Microbiology 65: 1504-1508.2015.
*. Yoshinori Takano, Hisaya Kojima, Eriko Takeda, Yusuke Yokoyama and Manabu Fukui. Biogeochemistry and limnology in Antarctic subglacial weathering: molecular evidence of the linkage between subglacial silica input and primary producers in a perennially ice-covered lake. Progress in Earth and Planetary Science 2: 8 (pp15). 2015.
*. Hisaya Kojima, Yoshitoshi Ogura, Nozomi Yamamoto, Tomoaki Togashi, Hiroshi Mori, Tomohiro Watanabe, Fumiko Nemoto, Ken Kurokawa, Tetsuya Hayashi and Manabu Fukui. Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence. The ISME Journal 9: 1166-1176.2015.
【2014年】
*. Hisaya Kojima, Riho Tokizawa and Manabu Fukui. Mizugakiibacter sediminis gen. nov., sp. nov., isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 3983-3987. 2014.
*. Hisaya Kojima, Riho Tokizawa, Kouhei Kogure, Yuki Kobayashi, Masayuki Itoh, Fuh-Kuw Shiah, Noboru Okuda and Manabu Fukui. Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer. Scientific Reports 4: 5728. DOI: 10.1038/srep05728.
*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria. Systematic and Applied Microbiology 37: 387-395.2014.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Proposal of Effusibacillus lacus gen. nov., sp. nov. and reclassification of Alicyclobacillus pohliae as Effusibacillus pohliae comb. nov. and Alicyclobacillus consociatus as Effusibacillus consociatus comb. nov.. International Journal of Systematic and Evolutionary Microbiology 64: 2770-2774.2014.
*. Kyoko Kubo, Hisaya Kojima, and Manabu Fukui. Vertical distribution of major sulfate-reducing bacteria in a eutrophic shallow meromictic lake. Systematic and Applied Microbiology 37: 510-519. 2014.
*. Hisaya Kojima, Johanna Moll, Joerg Kahnt, Manabu Fukui and Seigo Shima. A reversed genetic approach reveals the coenzyme specificity and the catalytic properties of three enzymes putatively involved in anaerobic oxidation of methane with sulfate. Environmental Microbiology 16: 3431-3442. 2014.
*. Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Identification of major planktonic sulfur oxidizers in stratified freshwater lake. PLoS ONE : e93877. 2014.
*. Hisaya Kojima and Manabu Fukui. Sulfurisoma sediminicola gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 1587-1592. 2014.
【2013年】
*. Tomohiro Watanabe, Hisaya Kojima, Yoshinori Takano and Manabu Fukui. Diversity of sulfur-cycle prokaryotes in freshwater lake sediments investigated using aprA as functional marker gene. Systematic and Applied Microbiology 36: 436-443.2013.
*. Yoshinori Iizuka, Barbara Delmonte, Ikumi Oyabu, Torbjoern Karlin, Valter Maggi, Amuel Albani, Manabu Fukui, Takeo Hondoh and Margareta Hansson. Sulphate and chloride aerosols during Holocene and last glacial periods preserved in the Talos Dome Ice Core, a peripheral region of Antarctica. Tellus B 65: 20197.2013.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfotomaculum intricatum sp. nov., a sulfate-reducer isolated from freshwater lake sediment. International Journal of Systematic and Evolutionary Microbiology 63: 3574-3578. 2013.
*.Takato Matsui, Hisaya Kojima, and Manabu Fukui. Effects of temperature on successive anaerobic decomposition of high-molecular organic matter under sulfate-reducing conditions. Estuarine, Coastal and Shelf Science 119: 139-144. 2013.
*. Akiko Kamono, Marianne Meyer, Thomas Cavalier-Smith, Manabu Fukui and Anne Maria Fiore-Donno. Exploring slime mould diversity in high altitude forests and grasslands by environmental RNA analysis. FEMS Microbiology Ecology 84: 98-108. 2013.
*. Yuriko Higashioka, Hisaya Kojima, Miho Watanabe and Manabu Fukui. Desulfatitalea tepidiphila gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from tidal flat sediment. International Journal of Systematic and Evolutionary Microbiology 63: 761-765. 2013.
*. Tomohiro Watanabe, Kyoko Kubo, Yoshiharu Kamei, Hisaya Kojima and Manabu Fukui. Dissimilatory microbial sulfur and methane metabolism in the water column of a shallow meromictic lake. Systematics and Applied Microbiology 71: 005138. 2022.
*. Ayaka Takahashi, Hisaya Kojima, Miho Watanabe, and Manabu Fukui. Pseudodesulfovibrio sediminis sp. nov., a mesophilic and neutrophilic sulfate-reducing bacterium isolated from sediment of a brackish lake. Archive of Microbiology 204: 307. 2022. https://doi.org/10.1007/s00203-022-02870-5
【2021年】
*. Toshihide Hirao, Masanori Fujii, Nobuhiko Shigyo, Hisaya Kojima and Manabu Fukui. Influence of understory vegetation on soil bacterial communities and nitrogen cycling gene abundance in cool-temperate and sub-alpine forests along an elevational gradient. Pedobiologia – International Journal of Soil Biology 87-88: 150746. 2021. https://doi.org/10.1016/j.pedobo.2021.150746
*. Miho Watanabe, Hisaya Kojima, Kunihiro Okano and Manabu Fukui. Mariniplasma anaerobium gen. nov., sp. Nov., a novel anaerobic marine mollicute, and proposal of three novel genera to reclassify members of Acholeplasma clusters II-IV. International Journal of Systematic and Evolutionary Microbiology 71: 005138. 2021. https://doi.org/10.1099/ijsem.0.005138
*. Takeshi Miyadera, Hisaya Kojima and Manabu Fukui. Methyloradius palustris gen. nov., sp. nov., a methanol-oxidizing bacterium isolated from snow. Archives of Microbiology 203: 5715-5721. 2021. https://doi.org/10.1007/s00203-021-02559-1
*. Kazuhiro Umezawa, Hisaya Kojima, Yukako Kato, Manabu Fukui. Dissulfurispira thermophila gen. nov., sp. nov., a thermophilic chemolithoautotroph growing by sulfur disproportionation, and proposal of novel taxa in the phylum Nitrospirota to reclassify the genus Thermodesulfovibrio. Systematic and Applied Microbiology 44: 126184. 2021. https://doi.org/10.1016/j.syapm.2021.126184
*. Jun Mochizuki, Hisaya Kojima and Manabu Fukui. Thiosulfativibrio zosterae gen. nov., sp. nov. and Thiosulfatimonas sediminis gen. nov., sp. nov. Arcives of Microbiology 203: 951-957. 2021. DOI 10.1007/s00203-020-02090-9.
【2020年】
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulforamulus gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Aquipluma nitroreducens gen.nov. sp.nov., a novel facultatively anaerobic bacterium isolated from freshwater lake. International Journal pf Systematic and Evolutionary Microbiology 70: 6408-6413. DOI 10.1099/ijsem.0.004551
*. Hisaya Kojima, Mamoru Kanda, Kazuhiro Umezawa and Manabu Fukui. Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae. Archives of Microbiology 203: 317-323. 2020. https://doi.org/10.1007/s00203-020-02029-0
*. Miho Watanabe, Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay. Systematics and Applied Microbiology 43: . 2020. https://doi.org/10.1016/j.syapm.2020.126109.
*. Kazuhiro Umezawa, Hisaya Kojima, Yukako Kato and Manabu Fukui. Disproportionatoin of inorganic sulfur compounds by a novel autotrophic bacterium belonging to Nitrospirota. Systematics and Applied Microbiology, 43: . 2020. https://doi.org/10.1016/j.syapm.2020.126110
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfoplanaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfofundulaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfotohalotomaculaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui, Alexander Galushko and Jan Kuever. Desulfosarcinaeceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfococcaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. in press, Wiley.
*. Hisaya Kojima, Jun Mochizuki and Manabu Fukui. Sulfuriferula nivalis sp. nov., a sulfur oxidizer isolated from snow and emended description of Sulfuriferula plumbiphila. International Journal of Systematic and Evolutionary Microbiology 70: 3273-3297. 2020. DOI 10.1099/ijsem.0.004166.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Aerosticca soli gen. nov., sp. nov., an aerobic gammaproteobacterium isolated from crude oil-contaminated soil. Archives of Microbiology 202: 1069-1079. 2020. doi.org/10.1007/s00203-020-01819-w.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Labilibaculum antarcticum sp. nov., a novel facultative anaerobic, psychrotorelant bacterium isolated from marine sediment of Antarctica. Antonie van Leeuwenhoek 113: 349-355. 2020.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfotomaculum. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfocanica gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfomaculaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria.2020, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfurisporaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfallaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfoscipio gen. nov. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfallas. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfobara. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfovirgula. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, and Jan Kuever. Desulfonema. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
*.Miho Watanabe, Manabu Fukui, Alexander Galushko and Jan Kuever. Genus Desulfosarcina. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2020, Wiley.
【2019年】
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfatitalea. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfocucumis. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Desulfocucuminaceae. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Miho Watanabe, Manabu Fukui and Jan Kuever. Genus Desulfoplanes. In Bergey’s Manual of Systematics of Archaea and Bacteria. 2019, Wiley.
*. Hisaya Kojima and Manabu Fukui. Thiomicrorhabdus aquaedulcis sp. nov., a sulfur-oxidizing bacterium isolated from lake water. International Journal pf Systematic and Evolutionary Microbiology 69: 2849-2853. 2019. https://doi.org/10.1099/ijsem.0.003567
*. Santona Khatun, Tomoya Iwata, Hisaya Kojima, Takuya Aoki, Seito Mochizuki, Azusa Naito, Ai Kobayashi and Ryo Uzawa. Aerobic methane production by planktonic microbes in lakes. Science of the Total Environment 696:133916 . 2019. DOI: 10.1016/j.scitotenv.2019.133916 .
*. Melody Christine Cabrera-Ospino, Hisaya Kojima and Manabu Fukui. Arsenite oxidation by a newly isolated betaproteobacterium possessing arx genes and diversity of the arx gene cluster in bacterial genomes. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.01210
*. Tomohiro Watanabe, Hisaya Kojima, Kazuhiro Umezawa, Chiaki Hori, Taichi E. Takasuka, Tukako Kato and Manabu Fukui. Genomes of neutrophilic sulfur-oxidizing chemolithoautotrophs representing 9 proteobacterial species from 8 genera. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00316
*. Miho Watanabe, Hisaya Kojima, Kazuhiro Umezawa, and Manabu Fukui. Genomic characteristics of Desulfonema ishimotonii Tokyo 01T implying horizontal gene transfer among phylogenetically dispersed filamentous gliding bacteria. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.00227
*. Mia Terashima, Keisuke Ohashi, Taichi E. Takasuka, Hisaya Kojima and Manabu Fukui. Antarctic heterotrophic bacterium Hymenobacter nivis P3T diplays light-enhanced growth and expresses putative proteins. Environmental Microbiology Reports 11:227-235. 2019. DOI: 10.1111/1758-2229.12702
*. Tatsunori Nakagawa, Yuki Tsuchiya, Shingo Ueda, Manabu Fukui and Reiji Takahashi. Eelgrass Sediment Microbiome as a Nitrous Oxide Sink in Brackish Lake Akkeshi, Japan. Microbes and Environments 67(1):13-22.2019. https://doi.org/10.1264/jsme2.ME18103
【2018年】
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov., and Desulfohalotomaculum gen. nov. International Journal of Systematic and Evolutionary Microbiology68(9):2891-2899.2018. doi: 10.1099/ijsem.0.002915.
*. Melody Cabrera Ospino, Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Diversity of anaerobic arsenite-oxidizing bacteria in low-salt environments analyzed with a newly develoed PCR-based method. Limnology 19: 177-183. 2018.
*. Junji Matsuo, Shinji Nakamura, Torahiko Okubo, Manabu Fukui and Hiroyuki Yamaguchi. Long-term survival Naegleria polaris from Antarctica after 10 years storage at 4℃. Parasitology Research 117: 937-941. 2018.
*. Miho Watanabe , Hisaya Kojima and Manabu Fukui. Complete genome sequence of Marinifilaceae bacterium strain SPP2, isolated from Antarctic marine sediment. Marine Genomics 39: 1-2. 2018.
【2017年】
*. Miho Watanabe, Riho Tokizawa, Hisaya Kojima and Manabu Fukui. High-quality draft genome sequence of Effusibacillus lacus skLN, facultative anaerobic spore-former isolated from freshwater lake sediment. Standards in Genomic Science 17:64. 2017. DOI 10.1186/s4079-017-302-y.
*Rei Okamoto, Hisaya Kojima and Manabu Fukui. Acidocella aquatica sp. nov., a novel acidophilic heterotrophic bacterium isolated from a freshwater lake. International Journal of Systematics and Evolutionary Microbiology 67: 4773-4776. 2017. DOI 10.1099/ijsem.0.002376.
* Masayuki Itoh, Hisaya Kojima, Pei-Chi Ho, Chun-Wei Chang, Tzong-Yueh Chen, Silver Sung-Yun Hsiao, Yuki Kobayashi, Megumi Fujibayashi, Shuh-Ji Kao, Chih-hao Hsieh, Manabu Fukui, Noboru Okuda, Takeshi Miki and Fuh-Kwo Shiah. Integrating isotopic, microbial, and modeling approaches to understand methane dynamics in a frequently disturbed deep reservoir in Taiwan. Ecological Research 32: 861-871. 2017. DOI 10.1007/s11284-017-1502-z.
*. Mia Terashima, Kazuhiro Umezawa, Shoichi Mori, Hisaya Kojima and Manabu Fukui. Microbial community structure analysis of colored snow from alpine snowfield in northern Japan reveals the prevalence of Betaproteobacteria with snow algae. Frontiers in Microbiology 8: 1481. doi:10.3389/fmicb.2017.01481
*. Hisaya Kojima, Miho Watanabe and Manabu Fukui. Sulfurivermis fontis gen. nov., sp. nov., a novel sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov. International Journal of Systematic and Evolutionary Microbiology 67: 3458-3461. 2017.
*. Tomohiro Watanabe, Aya Miura, Tomoya Iwata, Hisaya Kojima and Manabu Fukui. Dominance of Sulfuritalea species in nitrate-depleted water of a stratified freshwater lake and arsenate respiration ability within the genus. Environmental Microbiology Reports 9: 522-527. 2017.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Desulfoplanes formicivorans Pf12BT, a sulfate-reducing bacterium of the family Desulfomicrobiaceae. Standards in Genomic Sciences 2: 34. 2017.DOI:
*. Miho Watanabe, Yuriko Higashioka, Hisaya Kojima and Manabu Fukui. Desulfosarcina widdelii sp. nov. and Desulfosarcina alkanivorans sp. nov., hydrocarbon-degrading sulfate-reducing bacteria isolated from marine sediment and emended description of the genus Desulfosarcina. International Journal of Systematic and Evolutionary Microbiology 67: 2994-2997. 2017.DOI:
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfocucumis palustris gen. nov., sp. nov., a mesophilic sulfate reducer belonging to the Desulfotomaculum subcluster Ig. International Journal of Systematic and Evolutionary Microbiology 67: 2679-2682. 2017. DOI:
*. Hisaya Kojima, Miho Watanabe, and Manabu Fukui. Sulfuritortus calidifontis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a hot spring microbial mat. International Journal of Systematic and Evolutionary Microbiology 67:1355-1358. 2017. DOI: 10.1099/ijsem.0.001813
【2016年】
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui.Identity of major sulfur cycle prokaryotes in freshwater lake ecosystems revealed by a comprenensive phylogenetic study of the dissimilatory adenylylsulfate reductase. Scientific Reports 6: 36262. 2016.
*. Kazuhiro Umezawa, Tomohiro Watanabe, Aya Miura, Hisaya Kojima and Manabu Fukui. The complete genome sequences of sulfur-oxidizing gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T. Standards in Genomic Sciences 11: 71. 2016.
*. Hisaya Kojima, Miho Watanabe, Riho Tokizawa, Arisa Shinohara and Manabu Fukui. Hymenobacter nivis sp. nov., isolated from red snow in Antarctica. International Journal of Systematic and Evolutionary Microbiology 66: 4821-4825. 2016. DOI: 10.1099/ijsem.0.001435
*. Yuki Kobayashi, Hisaya Kojima, Masayuki Itoh, Noboru Okuda, Manabu Fukui and Fuh-Kwo Shiah. Abundance of planktonic methane-oxidizing bacteria in a subtropical reservoir. Plankton and Benthos Research 11: 144-146.2016. DOI: 10.3800/pbr.11.144
*. Hisaya Kojima and Manabu Fukui. Sulfuriflexus mobilis gen. nov., sp. nov., a sulfur-oxidizing bacterium isolated from a brackish lake sediment. International Journal of Systematic and Evolutionary Microbiology 66: 3515-3518.2016. doi: 10.1099/ijsem.0.001227
*. Rachel Rudd, Jonathan Tyler, John Tibby, Yusuke Yokoyama, Ines Tavernier, Elie Verleyen, Manabu Fukui and Yoshinori Takano. A diatom inferred of lake hydrological variability during the last 900 years in Luetzow-Holm Bay, East Antarctica. Journal of Quaternary Science 31: 114-125. 2016. DOI: 10.1002/jqs.2845
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula thiophila sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium, and correction of the name Sulfuriferula plumbophilus Watanabe, Kojima and Fukui 2015 to Sulfuriferula plumbophila corrig. International Journal of Systematic and Evolutionary Microbiology 66: 2041-2045.2016. Doi: 10.1099/ijsem.0.000988.
*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Planktonic bacterial communities in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 145-169.Springer. 2016.
*. Tomoya Iwata, Naoki Mochizuki, Takao Suzuki, Ayato Kohzu, Hisaya Kojima, Manabu Fukui and Jotaro Urabe. Roles of terrestrial carbon subsidies to aquatic community metabolism in mountain lake ecosystems. In: Structure and Function of Mountain Ecosystems in Japan. 115-144. Springer. 2016.
*. Tomohiro Watanabe, Aya Miura, Arisa Shinohara, Hisaya Kojima and Manabu Fukui. Thermithiobacillus plumbiphilus sp. nov., a sulfur-oxidizing bacterium isolated from lead sulfide. International Journal of Sysytematic and Evolutionary Microbiology 66: 1986-1989.2016. Doi: 10.1099/ijsem.0.000972.
*. Hisaya Kojima, Kazuhiro Umezawa and Manabu Fukui. Caldimicrobium thiodismutans sp. nov., a sulfur-disproportionating bacterium isolated from a hot spring, and emended description of the genus Caldimicrobium. International Journal of Systematics and Evolutionary Microbiology 66: 1828-1831.2016. Doi: 10.1099/ijsem.0.000947.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Complete genome sequence and cell structure of Limnochorda pilosa, a Gram negative spore former whithin the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 66: 1330-1339. 2016. Doi:10.1099/ijsem.0.000881.
*. Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Sulfuricaulis limicola gen. nov., sp. nov., a novel sulfur oxidizer from a lake. International Journal of Systematic and Evolutionary Microbiology 66: 266-270. 2016. Doi: 10.1099/ijsem.0.000709.
*. Tomohiro Watanabe, Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurirhabdus autotrophica gen. nov., sp. nov., isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 66: 113-117.2016. Doi: 10.1099/ijsem.0.000679.
【2015年】
*. Yuriko Higashioka, Hisaya Kojima, Tomohiro Watanabe and Manabu Fukui. Draft genome sequence of Desulfatitalea tepidiphila S28bFT. Genome Announcements 3: e01326-15. 2015.
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of Mizugakiibacter sediminis skMP5T. Genome Announcements 3: e01185-15. 2015.
*. Ikumi Oyabu, Yoshinori Iizuka, Hubertus Fischer, Simon Schüpbach, Gideon Gfeller, Anders Svensson, Manabu Fukui, Jørgen Peder Steffensen, and Margareta Hansson. Chemical compositions of solid particles present in the Greenland NEEM ice core over the last 110,000 years. Journal of Geophysical Research-Atmospheres 120: 9789-9813.2015. DOI: 10.1002/2015JD023290
*. Hisaya Kojima, Arisa Shinohara and Manabu Fukui. Sulfurifustis variabilis gen. nov., sp. nov., a novel sulfur oxidizer isolated from a lake, and proposal of Acidiferrobacteraceae fam. nov. and Acidiferrobacterales ord. nov. International Journal of Systematic and Evolutionary Microbiology 65: 3709-3713.2015. Doi:10.1099/ijsem.0.000479
*. Masayuki Itoh, Yuki Kobayashi, Tzong-Yueh Chen, Takeshi Tokida, Manabu Fukui, Hisaya Kojima, Takeshi Miki, Ichiro Tayasu, Fuh-Kwo Shiah and Noboru Okuda. Effect of inter-annual variation in winter vertical mixing on CH4 dynamics in a subtropical reservoir. Journal of Geophysics Research-Biogeoscience 120: 1246-1261. 2015.
*. Masanori Fujii, Toshihide Hirao, Hisaya Kojima and Manabu Fukui. Inter-taxonomic differences in bacterioplankton community assembly in oligotrophic mountain lakes of east Japan. Aquatic Microbial Ecology 75: 251-257. 2015.
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Draft genome sequence of a sulfur-oxidizing autotroph, Sulfuricella sp. strain T08, isolated from a freshwater lake. Genome Announcements 3: e00498-15. 2015.
*. Miho Watanabe, Hisaya Kojima, Manabu Fukui. Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultative anaerobic pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes. International Journal of Systematic and Evolutionary Microbiology 65: 2378-2394.2015. Doi:10.1099/ijs.0.000270
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfoplanes formicivorans gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a brackish meromictic lake, and emended description of the family Desulfomicrobiaceae. International Journal of Systematic and Evolutionary Microbiology 65: 1902-1907.2015.
*. Tomohiro Watanabe, Hisaya Kojima and Manabu Fukui. Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov. International Journal of Systematic and Evolutionary Microbiology 65: 1504-1508.2015.
*. Yoshinori Takano, Hisaya Kojima, Eriko Takeda, Yusuke Yokoyama and Manabu Fukui. Biogeochemistry and limnology in Antarctic subglacial weathering: molecular evidence of the linkage between subglacial silica input and primary producers in a perennially ice-covered lake. Progress in Earth and Planetary Science 2: 8 (pp15). 2015.
*. Hisaya Kojima, Yoshitoshi Ogura, Nozomi Yamamoto, Tomoaki Togashi, Hiroshi Mori, Tomohiro Watanabe, Fumiko Nemoto, Ken Kurokawa, Tetsuya Hayashi and Manabu Fukui. Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence. The ISME Journal 9: 1166-1176.2015.
【2014年】
*. Hisaya Kojima, Riho Tokizawa and Manabu Fukui. Mizugakiibacter sediminis gen. nov., sp. nov., isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 3983-3987. 2014.
*. Hisaya Kojima, Riho Tokizawa, Kouhei Kogure, Yuki Kobayashi, Masayuki Itoh, Fuh-Kuw Shiah, Noboru Okuda and Manabu Fukui. Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer. Scientific Reports 4: 5728. DOI: 10.1038/srep05728.
*. Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui. Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria. Systematic and Applied Microbiology 37: 387-395.2014.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Proposal of Effusibacillus lacus gen. nov., sp. nov. and reclassification of Alicyclobacillus pohliae as Effusibacillus pohliae comb. nov. and Alicyclobacillus consociatus as Effusibacillus consociatus comb. nov.. International Journal of Systematic and Evolutionary Microbiology 64: 2770-2774.2014.
*. Kyoko Kubo, Hisaya Kojima, and Manabu Fukui. Vertical distribution of major sulfate-reducing bacteria in a eutrophic shallow meromictic lake. Systematic and Applied Microbiology 37: 510-519. 2014.
*. Hisaya Kojima, Johanna Moll, Joerg Kahnt, Manabu Fukui and Seigo Shima. A reversed genetic approach reveals the coenzyme specificity and the catalytic properties of three enzymes putatively involved in anaerobic oxidation of methane with sulfate. Environmental Microbiology 16: 3431-3442. 2014.
*. Hisaya Kojima, Tomohiro Watanabe, Tomoya Iwata and Manabu Fukui. Identification of major planktonic sulfur oxidizers in stratified freshwater lake. PLoS ONE : e93877. 2014.
*. Hisaya Kojima and Manabu Fukui. Sulfurisoma sediminicola gen. nov., sp. nov., a novel facultative autotroph isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 64: 1587-1592. 2014.
【2013年】
*. Tomohiro Watanabe, Hisaya Kojima, Yoshinori Takano and Manabu Fukui. Diversity of sulfur-cycle prokaryotes in freshwater lake sediments investigated using aprA as functional marker gene. Systematic and Applied Microbiology 36: 436-443.2013.
*. Yoshinori Iizuka, Barbara Delmonte, Ikumi Oyabu, Torbjoern Karlin, Valter Maggi, Amuel Albani, Manabu Fukui, Takeo Hondoh and Margareta Hansson. Sulphate and chloride aerosols during Holocene and last glacial periods preserved in the Talos Dome Ice Core, a peripheral region of Antarctica. Tellus B 65: 20197.2013.
*. Miho Watanabe, Hisaya Kojima and Manabu Fukui. Desulfotomaculum intricatum sp. nov., a sulfate-reducer isolated from freshwater lake sediment. International Journal of Systematic and Evolutionary Microbiology 63: 3574-3578. 2013.
*.Takato Matsui, Hisaya Kojima, and Manabu Fukui. Effects of temperature on successive anaerobic decomposition of high-molecular organic matter under sulfate-reducing conditions. Estuarine, Coastal and Shelf Science 119: 139-144. 2013.
*. Akiko Kamono, Marianne Meyer, Thomas Cavalier-Smith, Manabu Fukui and Anne Maria Fiore-Donno. Exploring slime mould diversity in high altitude forests and grasslands by environmental RNA analysis. FEMS Microbiology Ecology 84: 98-108. 2013.
*. Yuriko Higashioka, Hisaya Kojima, Miho Watanabe and Manabu Fukui. Desulfatitalea tepidiphila gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from tidal flat sediment. International Journal of Systematic and Evolutionary Microbiology 63: 761-765. 2013.